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| Site name | Sequence | Gene | Function |
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| CE1 | TGCCACCGG | ZmPRR95-1 | Cis-acting element associated to ABRE, involved in ABA responsiveness |
| ABRE | TACGTGTC | ZmPRR1-1/1-2/37-1/37-2/59-1/59-2/73/95-1/95-2 | Cis-acting element involved in the abscisic acid responsiveness |
| CE3 | GACGCGTGTC | ZmPRR37-1/59-1 | Cis-acting element involved in ABA and VP1 responsiveness |
| TGA-element | AACGAC | ZmPRR1-1/37-1/95-1/95-2 | Auxin-responsive element |
| TGA-box | TGACGTAA | ZmPRR1-1/59-1/59-2/95-1/95-2 | Part of an auxin-responsive element |
| AuxRR-core | GGTCCAT | ZmPRR37-1/73 | Cis-acting regulatory element involved in auxin responsiveness |
| TCA-element | GAGAAGAATA | ZmPRR1-1/37-1/37-2/59-2 | Cis-acting element involved in salicylic acid responsiveness |
| CGTCA-motif | CGTCA | ZmPRR1-1/1-2/37-1/37-2/59-1/59-2/73/95-1/95-2 | Cis-acting regulatory element involved in the MeJA-responsiveness |
| TGACG-motif | TGACG | ZmPRR1-1/1-2/37-1/37-2/59-1/59-2/73/95-1/95-2 | Cis-acting regulatory element involved in the MeJA-responsiveness |
| ERE | ATTTCAAA | ZmPRR37-1/59-2 | Ethylene-responsive element |
| GARE-motif | AAACAGA | ZmPRR1-2/37-2/59-2/73 | Gibberellin-responsive element |
| P-box | CCTTTTG | ZmPRR1-1/1-2/37-2/59-2/73 | Gibberellin-responsive element |
| TATC-box | TATCCCA | ZmPRR95-2 | Cis-acting element involved in gibberellin-responsiveness |
| MSA-like | CCCAACGGT | ZmPRR37-1 | Cis-acting element involved in cell cycle regulation |
| CAT-box | GCCACT | ZmPRR1-2/59-1/95-1/95-2 | Cis-acting regulatory element related to meristem expression |
| CCGTCC-box | CCGTCC | ZmPRR1-2/59-1/95-1 | Cis-acting regulatory element related to meristem specific activation |
| Skn-1_motif | GTCAT | ZmPRR1-1/37-1/37-2/59-2/73/95-1/95-2 | Cis-acting regulatory element required for endosperm expression |
| GCN4_motif | CAAGCCA | ZmPRR37-1/37-2 | Cis-regulatory element involved in endosperm expression |
| CCAAT-box | CAACGG | ZmPRR37-1/59-1 | MYBHv1 binding site |
| TC-rich repeats | ATTTTCTCCA | ZmPRR1-1/1-2/37-1/59-1/59-2/95-1/95-2 | Cis-acting element involved in defense and stress responsiveness |
| HSE | AAAAAATTTC | ZmPRR1-1/1-2/37-2/59-1/59-2/73 | Cis-acting element involved in heat stress responsiveness |
| ARE | TGGTTT | ZmPRR37-2/73/95-1/95-2 | Cis-acting regulatory element essential for the anaerobic induction |
| GC-motif | CCCCCG | ZmPRR1-1/1-2/37-2/59-1/73 | Enhancer-like element involved in anoxic specific inducibility |
| MBS | CAACTG | ZmPRR1-1/1-2/37-1/59-2/73/95-1 | MYB binding site involved in drought-inducibility |
| C-repeat/DRE | TGGCCGAC | ZmPRR1-1/1-2 | Regulatory element involved in cold- and dehydration-responsiveness |
| LTR | CCGAAA | ZmPRR1-2/37-2/59-1/95-1 | Cis-acting element involved in low-temperature responsiveness |
| ACE | ACGTGGA | ZmPRR1-1/1-2/73/95-2 | Cis-acting element involved in light responsiveness |
| Circadian | CAANNNNATC | ZmPRR1-2/37-2/59-1/59-2/95-2 | Cis-acting regulatory element involved in circadian control |
| C-box | CTGACGTCAG | ZmPRR37-2 | Cis-acting regulatory element involved in light responsiveness |
| G-box | CACGTT | ZmPRR1-1/1-2/37-1/37-2/59-1/59-2/73/95-1/95-2 | Cis-acting regulatory element involved in light responsiveness |
| as-2-box | GATAatGATG | ZmPRR1-2 | Involved in shoot-specific expression and light responsiveness |
| 4 cl-CMA2b | TCTCACCAACC | ZmPRR1-1/37-2 | Light responsive element |
| Box I | TTTCAAA | ZmPRR37-1/59-2 | Light responsive element |
| GT1-motif | GGTTAA | ZmPRR1-2/37-2/95-2 | Light responsive element |
| MNF1 | GTGCCC(A/T)(A/T) | ZmPRR37-1/73 | Light responsive element |
| Sp1 | CC(G/A)CCC | ZmPRR1-1/1-2/37-1/37-2/59-1/59-2/73/95-1/95-2 | Light responsive element |
| Box II | TCCACGTGGC | ZmPRR37-1/73/95-1 | Part of a light responsive element |
| CATT-motif | GCATTC | ZmPRR1-1/95-2 | Part of a light responsive element |
| chs-CMA2a | GCAATTCC | ZmPRR73/59-2 | Part of a light responsive element |
| chs-CMA2b | GAACCTACACAC | ZmPRR37-1 | Part of a light responsive element |
| chs-Unit 1 m1 | ACCTAACCCGC | ZmPRR59-1 | Part of a light responsive element |
| GAG-motif | AGAGATG | ZmPRR37-1/59-2 | Part of a light responsive element |
| GA-motif | ATAGATAA | ZmPRR37-1/73 | Part of a light responsive element |
| GATA-motif | AAGGATAAGG | ZmPRR1-2/73 | Part of a light responsive element |
| I-box | acGATAATC | ZmPRR37-1/73/95-1 | Part of a light responsive element |
| LAMP-element | CCAAAACCA | ZmPRR73 | Part of a light responsive element |
| L-box | TCTCACCAACC | ZmPRR1-1/37-2 | Part of a light responsive element |
| TCCC-motif | TCTCCCT | ZmPRR37-1/73/95-1 | Part of a light responsive element |
| TCT-motif | TCTTAC | ZmPRR1-2 | Part of a light responsive element |
| MRE | AACCTAA | ZmPRR59-2/95-2 | MYB binding site involved in light responsiveness |
| ATC-motif | TGCTATCCA | ZmPRR37-1/59-1/95-1 | Part of a conserved DNA module involved in light responsiveness |
| AE-box | AGAAACAA | ZmPRR37-2/59-1/73/95-1 | Part of a module for light response |
| O2-site | GATGACATGG | ZmPRR1-1/59-1/59-2/95-1/95-2 | Cis-acting regulatory element involved in zein metabolism regulation |
| EIRE | TTCGACC | ZmPRR95-1 | Elicitor-responsive element |
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