The O28 Antigen Gene Clusters of Salmonella enterica subsp. enterica Serovar Dakar and Serovar Pomona Are Different

Table 2

Putative genes and proteins comprising the O antigen cluster of S. Pomona isolate 07-0213.

ORF	Position in Sequence (nt)	Length (bp)	%G + C	% DNA identity	Species with the closest DNA identity	Accession No.	Protein length (aa)	Similar protein	Protein Function	Species with closest protein homolog	% amino acid identity	Accession No. of closest homolog
1	101–1174	1074	42.92	97	S. Paratyphi A AKU_12601	FM200053.1	357	RmlB	dTDP-glucose 4,6 dehydratase	S. Typhi CT18	96	NP_456646.1
2	1176–2039	864	37.38	76	E. coli O103:H2 strain 12009	AP010958.1	287	RmlA	D-glucose-1-phosphate thymidylyltransferase	E. coli 101-1	86	ZP_03068444.1
3	2043–2438	396	33.08	71	E. coli serogroup O91	AY035396.1	131	FdtA	dTDP-6-deoxy-3,4-keto-hexulose isomerase	Pectobacterium carotovorum subsp. brasiliensis PBR1692	70	ZP_03826801.1
4	2435–2902	466	35.68	69	E. coli serogroup O2	EU549863.1	154	FdtC	acetyltransferase	Providencia rettgeri DSM 1131	68	ZP_06127571.1
5	2899–4002	1105	36.05	68	E. coli strain H515b	EF027106.1	368	FdtB	aminotransferase	E. coli 101-1	83	ZP_03068415.1
6	4005–5261	1257	30.15	—	none	—	418	Wzx	O-antigen flippase	E. coli 101-1	80	ZP_03068086.1
7	5262–6578	1317	29.31	—	none	—	438	Wzy	oligosaccharide repeat unit polymerase	E. coli 101-1	75	ZP_03068123.1
8	6565–7440	876	29.79	71% over 122 nt	Pasteurella multocida subsp. multocida strain Pm70	AE004439.1	292	WbuM	glycosyltransferase group 2 family	E. coli 101-1	77	ZP_03068240.1
9	7440–8123	684	29.09	—	none	—	227	WbuN	phosphoserine phosphatase	E. coli O114	43	AAT77178.1
10	8110–8901	792	26.44	—	none	—	263	WbuO	O-antigen acyltransferase	E. coli 101-1	67	ZP_03068384.1
11	8894–9718	825	34.18	74 (128 nt)	E. coli O117	EU694096.1	274	AmsE	amylovoran biosynthesis glycosyltransferase	E. coli 101-1	56	ZP_03068341.1