The Response of Enterococcus faecalis V583 to Chloramphenicol Treatment

Table 1

Genes whose expression was significantly different from 0 (upregulated or downregulated during the whole time series (three time points)).

		t0		t90		t180
Gene	Function	logFC ML^1	logFC GP^2	logFC ML	logFC GP	logFC ML	logFC GP
EF0290	Cystathionine beta-lyase	−0.45	−0.46	−1.66	−1.36	1.07	0.97
EF0727	Conserved hypothetical protein TIGR00147	0.65	0.64	0.40	0.38	1.42	1.34
EF1527	P-binding protein	0.82	0.83	0.56	0.57	1.31	1.28
EF1694	Ribosomal protein S16	1.25	1.28	0.91	0.95	1.62	1.74
EF1733	ABC transporter	0.48	0.51	3.00	2.96	2.77	1.79
EF2173	Transposase	0.62	0.61	0.43	0.48	1.12	1.36
EF2185	Transposase	0.73	0.70	0.89	0.84	1.08	1.15
EF2420	Homoserine kinase	0.63	0.55	0.71	0.69	1.28	1.28
EF2443	Ribosomal protein S20	0.81	0.76	0.80	0.81	1.83	1.84
EF2633	Chaperonin	−0.56	−0.52	0.89	0.89	−2.79	−2.67
EF2634	Chaperonin	−0.87	−0.90	0.99	1.00	−2.11	−1.83
EF2868	Conserved hypothetical protein	0.57	0.54	1.00	1.00	1.71	1.49
EF2973	Alkaline phosphatase	0.72	0.64	1.46	1.25	1.23	1.14
EF3254	1,4-dihydroxy-2-naphthoate octaprenyl transferase, putative	0.65	0.66	1.45	1.32	1.58	1.43
EF3295	Hypothetical protein	0.51	0.49	0.49	0.49	2.09	1.90

¹logFC ML; log-value of transcription ratio of gene based on the analysis using the prototype image analysis program;
²logFC GP; log-value of transcription ratio of gene based on the analysis using the GenePix method for image analysis.