|
Function and gene | Description | Logarithmic ratio (S/C) | P-value |
|
Amino acid biosynthesis | | | |
hisG | Histidine biosynthesis | 2.05 | - |
argB | Arginine biosynthesis | 3.05 | - |
argC | Arginine biosynthesis | 3.52 | - |
argG | Arginine biosynthesis | 3.07 | - |
asnB | Asparagine synthetase B | 3.41 | - |
thrL | Thr operon leader peptide | 3.43 | - |
cysK | Cysteine biosynthesis | 3.53 | - |
|
Antibiotic resistance | | | |
marA | Multiple antibiotic resistance protein | 4.20 | - |
marB | Multiple antibiotic resistance protein | 4.41 | - |
marR | Multiple antibiotic resistance protein | 5.16 | - |
|
DNA replication/repair, restriction/modification | | | |
priB | Primosomal replication protein | 2.19 | - |
topA | DNA topoisomerase I | 2.33 | - |
fis | DNA binding protein Fis | 2.37 | - |
priA | Primosome assembly protein | 2.60 | - |
|
Metabolism | | | |
aceE | Pyruvate dehydrogenase E1 subunit | 2.03 | - |
asmA | Protein asmA precursor; electron transport | 2.21 | - |
lpdA | Dihydrolipoamide dehydrogenase; energy metabolism | 2.24 | - |
nemA | N-ethylmaleimide reductase; central intermediary metabolism | 2.71 | - |
glpC | Anaerobic glycerol-3-phosphate dehydrogenase subunit C | 2.81 | - |
yfhO | Cysteine metabolism; amino acid metabolism | 3.25 | - |
icdA | Isocitrate dehydrogenase; TCA cycle metabolism | 3.48 | - |
adhC | Alcohol dehydrogenase class III; energy metabolism | 4.19 | - |
yibO | Phosphoglyceromutase; carbohydrate metabolism | 6.21 | - |
ttdB | L(+)-tartrate dehydrase; energy metabolism | 0.44 | - |
hycG | Formate hydrogenlyase subunit 7; mitochondrial electron transport | 0.44 | - |
phnH | Carbon-phosphorus lyase complex subunit; central intermediary metabolism | 0.45 | - |
mhpF | Acetaldehyde dehydrogenase; amino acid metabolism | 0.46 | - |
phnJ | Carbon-phosphorus lyase complex subunit; central intermediary metabolism | 0.46 | - |
hycF | Hydrogenase 4 Fe-S subunit formate hydrogenlyase, complex iron-sulfur protein | 0.47 | - |
eutI | Phosphate acetyltransferase | 0.47 | - |
ygjL | 2,4-dienoyl-CoA reductase (NADPH), NADH and FMN-linked | 0.49 | - |
|
Pathogenesis and virulence | | | |
vacB | Ribonuclease R, exoribonuclease R, RNase R | 2.26 | - |
tolA | Colicin production | 2.26 | - |
wcaL | Colanic acid biosynthesis; resistance to acid stress, desiccation, and thermal stress | 2.51 | - |
ygeO | Hypothetical protein | 2.66 | - |
|
Phage, transposon, or plasmid | | | |
sieB | Rac prophage; phage superinfection exclusion protein | 0.43 | - |
Lar | Rac prophage; restriction alleviation protein | 0.43 | - |
ydaE | Rac prophage; conserved protein | 0.44 | - |
ydaQ | Rac prophase; conserved protein | 0.45 | - |
ydaC | Rac prophage predicted protein | 0.50 | - |
ymfP | E14 prophage; conserved protein | 4.46 | - |
mprA | Translational repressor mprA; plasmid related function | 3.53 | - |
|
Ribosomal proteins | | | |
rpsU | 30S ribosomal protein S21 | 2.25 | - |
rpsT | 30S ribosomal protein S20 | 2.35 | - |
rplY | 50S ribosomal protein L25 | 2.35 | - |
rpmF | 50S ribosomal protein L32 | 2.43 | - |
rpmH | 50S ribosomal protein L34 | 2.52 | - |
rplK | 50S ribosomal protein L11 | 2.67 | - |
rpsR | 30S ribosomal protein S18 | 2.87 | - |
rplA | 50S ribosomal protein L1 | 2.87 | - |
rpmD | 50S ribosomal protein L30 | 3.17 | - |
rpsJ | 30S ribosomal protein S10 | 3.24 | - |
rpmE | 50S ribosomal protein L31 | 3.32 | - |
rplW | 50S ribosomal protein L23 | 3.53 | - |
rpsH | 30S ribosomal protein S8 | 4.34 | - |
rplF | 50S ribosomal protein L6 | 4.57 | - |
rplX | 50S ribosomal protein L24 | 4.66 | - |
rpsN | 30S ribosomal protein S14 | 5.68 | - |
|
Stress response | | | |
cspE | Cold shock protein E | 2.02 | - |
yfiA | Cold shock protein, associated with 30S ribosomal subunit | 2.10 | - |
htpX | Heat shock protein | 2.10 | - |
sulA | SOS cell division inhibitor | 2.17 | - |
ymcE | Cold shock gene | 2.33 | - |
dnaK | Heat shock protein; molecular chaperone | 2.48 | - |
recA | Recombinase A; SOS response | 2.59 | - |
rpoS | Response to organic acid stress and acetate induced acid tolerance; regulatory function | 2.68 | - |
ahpC | Alkyl hydroperoxide reductase C22 protein; oxidative stress | 2.91 | - |
dead | Cold shock DEAD box protein A | 3.04 | - |
rpoH | RNA polymerase sigma factor; heat response | 3.19 | - |
Spy | Envelope stress induced periplasmic protein | 3.54 | - |
osmB | Osmotic adaptation; Osmotically inducible lipoprotein B precursor | 4.77 | - |
cspG | Cold shock protein | 5.04 | - |
cpxP | Envelope stress response | 7.08 | - |
cspA | Cold shock protein cspA, major cold shock protein | 8.59 | - |
|
Transcription, RNA processing, and degradation | | | |
rpoB | DNA directed RNA polymerase beta subunit; transcription | 2.12 | - |
rpoD | Hypothetical protein, RNA polymerase sigma factor | 2.20 | - |
Pnp | Polyribonucleotide, nucleotidyltransferase; RNA processing | 2.21 | - |
rpnA | Ribonuclease P | 2.31 | - |
Rne | Ribonuclease E, fused ribonuclease E: endoribonuclease | 2.72 | - |
rpoA | DNA-directed RNA polymerase alpha subunit; transcription | 2.92 | - |
nusA | Transcription elongation factor NusA | 3.16 | - |
Rho | Transcription termination factor Rho | 3.34 | - |
|
Translation and posttranslational modification | | | |
soxS | Regulatory protein, DNA binding dual transcriptional regulator | 2.44 | - |
tufA | Elongation factor Tu, protein chain elongation factor (EF-Tu) | 2.61 | - |
infA | Translation initiation factor IF-1 | 3.09 | - |
infC | Translation initiation factor IF-3 | 3.31 | - |
fusA | Elongation factor EF-2 | 3.36 | - |
infB | Translation initiation factor IF-2 | 4.13 | - |
|
Transport and binding proteins | | | |
phnO | Phosphonate transport, N-acetyltransferase activity | 0.46 | - |
treB | PTS system, trehalose-specific IIBC component; transport of small molecules | 0.47 | - |
malK | Maltose/maltodextrin transport | 0.48 | - |
thiQ | Thiamine transport | 0.49 | - |
fepB | Iron-enterobactin transporter subunit | 0.49 | - |
cusB | Copper efflux system protein | 2.02 | - |
yjbB | Phosphate transport, sodium dependent phosphate transporter | 2.07 | - |
livJ | Leucine/isoleucine/valine transporter subunit | 2.22 | - |
oppA | Oligopeptide transporter subunit | 2.32 | - |
lolE | Lipoprotein releasing system, transmembrane protein lolE | 2.32 | - |
prlA | Preprotein translocase; protein transport | 2.46 | - |
glnH | Glutamine ABC transporter, periplasmic-binding protein | 2.50 | - |
artP | Arginine transport | 2.52 | - |
fepD | Ferric enterobactin transport system | 3.25 | - |
fepE | Ferric enterobactin transport protein | 3.85 | - |
|