Distribution and Genetic Diversity of Salmonella enterica in the Upper Suwannee River
Table 2
Distribution of rep-PCR genogroups related to the source of Salmonella isolates.
Rep-PCCR genogroupa
Number of isolates by source
Total
DiversiLab
ATCC
Suwannee River
FL lakes
Other (source)
1
4
1
3
0
0
0
2
5
5
0
0
0
0
3
4
0
0
3
0
1 (Orange)
4
3
0
2
0
0
1 (Orange)
5
187
161
4
9
4
6 (Orange)
2 (Cantaloupe)
1 (Toad)
6
42
35
7
0
0
0
7
24
10
7
3
0
4 (Orange)
8
7
0
1
2
1
3 (Orange)
9
3
0
0
3
0
0
10
40
0
1
39
0
0
11
67
51
0
3
13
0
12
15
13
0
2
0
0
13
21
20
0
0
0
1 (Alfalfa)
14
15
4
2
5
0
4 (Frog)
15
36
0
0
35
0
1 (Tomato)
16
5
4
0
0
0
1 (Reptile
N.C.b
21
10
1
6
1
2 (Water/soil)
1 (Reptile)
Total
499
314
28
110
19
28
aStrains were clustered into genogroups with more than two strains showing >85% similarity between strains.
bN.C.: Strains that did not cluster and showed <85% to other strains.
