Illumina MiSeq Sequencing for Preliminary Analysis of Microbiome Causing Primary Endodontic Infections in Egypt

Table 3

Community diversity indices: Coverage, Simpson, Invsimpson, Shannon, Npshannon, stat, and Berger-Parker.

Group	seqs	Coverage	Simpson	Invsimpson	Shannon	Npshannon	stat	Berger-Parker
1	2000	0.99	0.05	20.46	4.64	5.29	253.91	0.19
2	2000	0.90	0.03	38.10	4.52	4.90	160.14	0.09
3	2000	0.94	0.02	65.38	5.07	5.51	265.46	0.05
4	2000	0.96	0.02	59.33	5.21	5.78	278.44	0.08
5	2000	0.97	0.03	30.90	4.69	5.32	214.96	0.13
6	2000	0.94	0.03	29.92	4.80	5.33	321.00	0.14
7	2000	0.99	0.02	60.74	5.32	5.85	392.41	0.08
8	2000	0.91	0.07	14.44	4.53	5.28	375.82	0.24
9	2000	0.91	0.02	49.64	5.12	5.65	327.49	0.09
10	2000	0.92	0.08	12.21	3.90	4.44	164.47	0.23
11	2000	0.99	0.02	56.74	5.23	5.77	326.05	0.07
12	2000	0.92	0.01	119.61	5.65	6.20	372.94	0.04
13	2000	0.95	0.06	17.85	4.90	5.85	282.05	0.23
14	2000	0.99	0.02	43.05	4.88	5.44	221.45	0.09
15	2000	0.99	0.04	28.08	4.83	5.45	293.59	0.15
16	2000	0.97	0.03	31.07	4.91	5.56	313.06	0.12
17	2000	0.95	0.02	45.51	5.46	6.20	506.39	0.11
18	2000	0.96	0.08	13.15	4.35	4.88	236.60	0.26
20	2000	0.95	0.01	114.42	5.86	6.44	534.52	0.05

seqs: number of sequences in the sample; Simpson: Simpson diversity index; Invsimpson: inverse Simpson index (); Shannon: Shannon diversity index; Npshannon: nonparametric estimate of classical Shannon diversity index; stat: statistic index; Berger-Parker: Berger-Parker index.