Research Article
Illumina MiSeq Sequencing for Preliminary Analysis of Microbiome Causing Primary Endodontic Infections in Egypt
Table 4
Shared OTUs (bold) and shared Chao index (italicized) between each pair of the dental root canal content samples.
| ā | Sample 1 | Sample 2 | Sample 3 | Sample 4 | Sample 5 | Sample 6 | Sample 7 | Sample 8 | Sample 9 | Sample 10 | Sample 11 | Sample 12 | Sample 13 | Sample 14 | Sample 15 | Sample 16 | Sample 17 | Sample 18 | Sample 20 |
| Sample 1 | - | 41 | 34 | 36 | 41 | 30 | 38 | 19 | 39 | 25 | 18 | 42 | 23 | 17 | 14 | 13 | 15 | 36 | 43 | Sample 2 | 57.04 | - | 29 | 34 | 42 | 30 | 33 | 25 | 34 | 47.50 | 110.00 | 90.38 | 26.50 | 86.50 | 66.50 | 36.50 | 36.65 | 80.50 | 101.11 | Sample 3 | 68.33 | 112.64 | - | 44 | 32 | 24 | 43 | 23 | 46 | 40.58 | 92.50 | 92.01 | 35.77 | 110.10 | 54.75 | 33.00 | 31.25 | 62.71 | 77.54 | Sample 4 | 57.85 | 84.22 | 77.33 | - | 37 | 32 | 48 | 25 | 49 | 42.10 | 57.42 | 80.74 | 50.06 | 88.07 | 49.75 | 53.13 | 54.00 | 74.97 | 85.3125 | Sample 5 | 63.27 | 80.57 | 72.85 | 83.75 | - | ā | 31 | 26 | 37 | 43.90 | 78.00 | 62.87 | 40.64 | 73.00 | 72.00 | 42.00 | 47.00 | 72.28 | 84.68 | Sample 6 | 46.68 | 56.58 | 49.23 | 41.33 | 67.50 | - | 34 | 29 | 41 | 46.89 | 49.58 | 49.50 | 30.90 | 70.75 | 33.61 | 44.50 | 39.90 | 57.08 | 53.71 | Sample 7 | 89.63 | 63.42 | 76.10 | 96.48 | 55.50 | 39.26 | - | 26 | 47 | 45.64 | 77.17 | 91.47 | 69.33 | 71.33 | 43.50 | 38.00 | 36.86 | 58.58 | 77.67 | Sample 8 | 29.25 | 46.17 | 39.42 | 43.48 | 64.00 | 41.60 | 36.50 | - | 35 | 40.88 | 66.33 | 49.42 | 42.38 | 31.83 | 35.83 | 29.00 | 39.23 | 53.76 | 38.79 | Sample 9 | 63.79 | 80.93 | 63.71 | 105.64 | 76.76 | 47.14 | 65.66 | 73.64 | - | 39.82 | 85.21 | 101.58 | 71.64 | 79.50 | 57.08 | 40.00 | 36.05 | 125.85 | 80.58 | Sample 10 | 48.79 | 25 | 27 | 30 | 23 | 26 | 34 | 22 | 30 | - | 32 | 42 | 23 | 26 | 20 | 19 | 19 | 29 | 39 | Sample 11 | 33.00 | 25 | 46 | 34 | 24 | 38 | 39 | 31 | 48 | 44.95 | - | 49 | 21 | 41 | 34 | 22 | 31 | 37 | 49 | Sample 12 | 67.14 | 36 | 65 | 56 | 35 | 40 | 56 | 27 | 60 | 77.94 | 115.39 | - | 32 | 52 | 31 | 35 | 32 | 47 | 68 | Sample 13 | 38.17 | 20 | 22 | 31 | 25 | 20 | 25 | 22 | 32 | 44.07 | 34.04 | 60.35 | - | 18 | 19 | 18 | 14 | 37 | 28 | Sample 14 | 46.00 | 21 | 46 | 34 | 20 | 25 | 31 | 16 | 37 | 64.75 | 68.48 | 124.23 | 33.70 | - | 20 | 12 | 16 | 29 | 50 | Sample 15 | 28 | 17 | 26 | 27 | 21 | 29 | 23 | 25 | 35 | 50.70 | 57.58 | 54.11 | 42.14 | 36.83 | - | 18 | 23 | 29 | 26 | Sample 16 | 16 | 16 | 18 | 28 | 15 | 23 | 23 | 20 | 23 | 29.25 | 41.50 | 63.43 | 22.67 | 33.50 | 26.50 | - | 25 | 25 | 23 | Sample 17 | 21 | 18 | 21 | 25 | 19 | 30 | 27 | 28 | 30 | 20.20 | 37.92 | 45.65 | 16.15 | 34.83 | 25.89 | 40.70 | - | 28 | 27 | Sample 18 | 84.1 | 37 | 37 | 43 | 38 | 39 | 35 | 35 | 54 | 45.00 | 71.04 | 63.49 | 74.19 | 61.00 | 50.42 | 31.00 | 39.75 | - | 49 | Sample 20 | 70.4 | 51 | 48 | 51 | 45 | 34 | 48 | 27 | 54 | 59.00 | 81.24 | 114.24 | 42.02 | 111.21 | 102.14 | 48.70 | 38.42 | 92.80 | - |
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