Research Article
Brown Rot-Type Fungal Decomposition of Sorghum Bagasse: Variable Success and Mechanistic Implications
Table 2
Number of copies of gene families with activity on glucuronoarabinoxylan, cellulose, and mixed linkage glucan present in the genomes of seven brown rot fungi. The major taxonomic affiliations are shown, SL, Serpula lacrymans, CP, Coniophora puteana, WC, Wolfiporia cocos, PP, Postia placenta, FP, Fomitopsis pinicola, GT, Gloeophyllum trabeum, DP, Dacryopinax sp.
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Each abbreviation represents an EC number indicating the specificity of an enzyme in each family. 4MGU, 4-O-methyl-glucuronyl methylesterase (EC 3.1.1.-), ABF, α-arabinofuranosidase (EC 3.2.1.55), AE, acetylesterase (EC 3.1.1.6), AXH, arabinoxylan arabinofuranohydrolase (EC 3.2.1.55), AXE, acetyl xylan esterase (EC 3.1.1.72), AGU, α-glucuronidase (EC 3.2.1.131), B3G, β-1,3-glucosidase (EC 3.2.1.58), B4G, β-1,4-glucosidase (EC 3.2.1.74), BGL, β-glucosidase (EC 3.2.1.21), BGU, β-glucuronidase (EC 3.2.1.31), BXL, β-xylosidase (EC 3.2.1.37), CBHII, cellobiohydrolase (EC 3.2.1.91), CBHI, cellobiohydrolase reducing end (EC 3.2.1.176), E34G, endo-β-1,3-1,4-glucanase (EC 3.2.1.73/3.2.1.6), E364G, exo-β-1,3-1,6 and endo-β-1,4-glucanase (EC 3.2.1.-), E3G, endo-β-1,3-glucanase (EC 3.2.1.39), EXG, exo-β-1,4-glucanase (EC 3.2.1.74), EGL, endo-β-1,4-glucanase (EC 3.2.1.4), EXL, endo-β-1,4-xylanase (EC 3.2.1.8), FE, feruloyl esterase (3.1.1.73); CE, carbohydrate esterase, GH, glycoside hydrolase; gene counts are adapted from [14]. |