Review Article

Clinical Symptoms and Types of Samples Are Critical Factors for the Molecular Diagnosis of Symptomatic COVID-19 Patients: A Systematic Literature Review

Table 1

The clinical and molecular results of the conducted studies.

AuthorNumber of patientsClinical symptomsMolecular evaluationRef
Sample typePCR result (%)Target gene
+

Young18Fever: 13 (72%)
Cough: 15 (83%)
Shortness of breath: 2 (11%)
Rhinorrhea: 1 (6%)
Sore throat: 11 (61%)
Diarrhea: 3 (17%)
Whole blood, stool, and urine samples; nasopharyngeal swabs18 (100%)[20]
Liu12Fever (10/12)
Cough (11/12)
Myalgia (4/12)
Chills (5/12)
Nausea or vomiting (2/12)
Diarrhea (2/12)
Bronchoalveolar lavage fluid (BALF) and throat swabs samples were collected from 10 patients
Blood and plasma samples
12 (100%)ORF1ab and N genes of 2019-nCoV[21]
To12Saliva11 (91.7%)1 (0.03%)S gene[22]
Cai10Fever: 8 (80%)
Cough: 6 (60%)
Sore throat: 4 (40%)
Stuffy nose: 3 (30%)
Sneezing and rhinorrhea 2 (20%)
Nasopharyngeal and throat swabs, fecal samples (6 patients), and urine and serum samples (5 patients)10 (100%)[23]
Guan1099Fever (43.8% on admission and 88.7% during hospitalization)
Cough (67.8%)
Diarrhea (3.8%)
Nasal and pharyngeal swab1099 (100%)[24]
Tian262Fever (82.1%)
Cough (45.8%)
Fatigue (26.3%)
Dyspnea (6.9%)
Headache (6.5%)
262 (100%)[25]
Zou18FeverNasal swabs and throat swabs18 (100%)N and Orf1b genes of SARS-CoV-2[26]
Dai6COVID-19 positive:
Case 1: fever and headache
Case 2: fever, cough, and myalgia
Case 3: pharyngalgia and fever
Case 4: fever/diarrhea twice
Other diseases:
Case 1: cough, chest pain, and wheezing
Case 2: chest pain
COVID-19 Positive:
Case 1: respiratory tract
Case 2: blood
Case 3: pharyngeal swabs
Case 4: blood specimens
Other diseases:
Respiratory tract
4 (66.7%)2 (33.3%)[27]
Huang59Fever: 40/41 (98%), cough: 31/41 (76%), myalgia or fatigue: 18/41 (44%), sputum production: 11/39 (28%), headache: 3/38 (8%), hemoptysis: 2/39 (5%), diarrhea: 1/38 (3%), and dyspnea: 22/40 (55%)Blood, serum, nasal, and pharyngeal swabs, BALF, sputum, and bronchial aspirates41 (69%)18 (31%)NP gene[28]
Huang84Fever: 32 (94.1%), cough: 17 (50%), myalgia or fatigue: 22 (64.7%), diarrhea: 5 (14.7%), and headache: 2 (5.9%)34 (40%)50 (60%)[29]
Li425Respiratory specimen BALF425 (100%)Open reading frame 1a or 1b and nucleocapsid protein[30]
Chang13Fever: 12, cough: 6 (46.3%), upper airway congestion: 8 (61.5%), myalgia: 3 (23.1%), and headache: 3 (23.1%)Throat swab13 (100%)[31]
Wang138Fever: 136 (98.6%)
Fatigue: 96 (69.6%)
Dry cough: 82 (59.4%)
Anorexia: 55 (39.9%)
Myalgia: 48 (34.8%)
Dyspnea: 43 (31.2%)
Expectoration: 37 (26.8%)
Pharyngalgia: 24 (17.4%)
Diarrhea: 14 (10.1%)
Nausea: 14 (10.1%)
Dizziness: 13 (9.4%)
Headache: 9 (6.5%)
Vomiting: 5 (3.6%)
Abdominal pain: 3 (2.2%)
Throat swab138 (100%)ORF1ab and nucleocapsid protein (N)[32]
Yang149Fever: 114/149 (76.5%), cough: 87/149 (58.4%), expectoration: 48/149 (32.2%), vomiting: 2/149 (1.3%), dyspnea: 2/149 (1.3%), chest pain: 5 (3.36%), chest tightness: 16 (10.74%), chills: 21 (14.09%)
Sore throat: 21 (14.09%)
Diarrhea: 11 (7.38%)
Muscle pain: 5 (3.36%)
Snotty: 5 (3.36%)
Nasal and pharyngeal swab specimens or induced sputum149 (100%)[33]
Xu50Fever
Cough: 20/50 (40%)/
Expectoration: 7/50 (14%)
Sore throat: 4/50 (8%)
Headache: 5/50 (10%)
Fatigue: 8/50 (16%)
Muscle ache: 8/50 (16%)
Chest tightness and dyspnea: 4/50 (8%)
Gastrointestinal reaction: 1/50 (2%)
50 (100%)[34]
Xu62Fever: 48/62 (77%), cough: 50/62 (81%), expectoration: 35/62 (56%), headache: 21/62 (34%), myalgia or fatigue: 32/62 (52%), diarrhea: 3/62 (8%), hemoptysis: 2/62 (3%), and shortness of breath: 2/62 (3%)Sputum and throat swabs62 (100%)[35]
Xie19Fever: 14 cases
Cough: 13 cases
Fatigue: 9 cases
Diarrhea: 3 cases
Oropharyngeal swab, blood, urine, and stool9 (47.4%)10 (52.6%)ORF1b and N[36]
Chen99Fever: 82 (83%), cough: 81 (82%), shortness of breath: 31 (31%), muscle ache: 11 (11%), confusion: 9 (9%), headache: 8 (8%), sore throat: 5 (5%), rhinorrhea: 4 (4%), chest pain: 2 (2%), diarrhea: 2 (2%), and nausea and vomiting: 1 (1%)Throat swab/blood99 (100%)[37]
Shi81Fever: 59 (73%)
Dyspnea: 34 (42%)
Chest tightness: 18 (22%)
Cough: 48 (59%)
Sputum: 15 (19%)
Rhinorrhea: 21 (26%)
Anorexia: 1 (1%)
Weakness: 7 (9%)
Vomiting: 4 (5%)
Headache: 5 (6%)
Dizziness: 2 (2%)
Diarrhea: 3 (4%)
Throat swab specimens81 (100%)Envelope gene[38]
Xu90Fever: 70 (78%)
Cough: 57 (63%)
Sputum production: 11 (12%)
Fatigue weakness: 19 (21%)
Myalgia: 25 (28%)
Sore throat: 23 (26%)
Chills: 6 (7%)
Headache: 4 (4%)
Diarrhea: 5 (6%)
Nausea: 5 (6%)
Vomit: 2 (2%)
No obvious symptoms: 6 (7%)
90 (100%)[39]
Zhang178Oral swabs, anal swabs, and blood of these patients, 8 were oral swabs positive (53.3%), 4 were anal swabs positive (26.7%), 6 blood positives (40%), and 3 serum positives (20%). Two patients were positive by both oral swab and anal swab, yet none of the blood positive was also swab positiveIn the first investigation: 39 (100%) patients
In the second investigation: 139 (100%) patients
S gene[40]
Ai1014Fever and dry coughThroat swab601 (59%)413 (41%)[41]
Bergheim121Fever: 74 cases (61%)
Cough: 58 cases (48%)
Sputum production: 20 cases (17%)
Bronchoalveolar lavage, endotracheal aspirate, nasopharyngeal swab, or oropharyngeal swab.121 (100%)[42]
Chen29The main symptoms of 2019-nCoV pneumonia was fever (28/29) with or without respiratory and other systemic symptoms29 (100%)[43]
Chung21Fever: 14 cases (67%)
Fatigue: 3 cases (14%)
Headache: 3 cases (14%)
Cough: 9 cases (43%)
Muscle soreness: 3 cases (14%)
Nausea: 1 case (5%)
No obvious symptoms: 2 cases (10%)
Bronchoalveolar lavage, endotracheal aspirate, nasopharyngeal swab, or oropharyngeal swab21 (100%)[44]
Fang51Fever or acute respiratory symptoms of unknown causeThroat swab (45 patients) or sputum samples (6 patients)51 (100%)[45]
Kui137Fever (112/137, 81.8%), expectoration 6 (4.4%), hemoptysis 7 (5.1%), coughing (66/137, 48.2%), and muscle pain or fatigue (44/137, 32.1%), with other, less typical initial symptoms observed at low frequency, including heart palpitations, diarrhea, and headacheRespiratory tract samples137 (100%)ORF1ab/N[46]
Li53 casesIn 51 cases:
Fever: 46 (90.2%)
Fatigue and poor appetite: 3 (5.9%)
Cough: 1 (2.0%)
No symptoms: 1 (2.0%)
Oropharyngeal swab51 (96.3%)2 (3.7%)[47]
Li54Fever, chills, cough, fatigue, and chest distress. Some other symptoms were headache, myalgia, dyspnea, diarrhea, nausea, and vomitingPharyngeal swab31 (57%)23 (43%)[48]
Liu30Fever in 23 patients (76.67%), headache in 16 patients (53.33%), fatigue or myalgia in 21 patients (70%), nausea, vomiting, or diarrhea in 9 patients (30%), cough in 25 patients (83.33%), and dyspnea in 14 patients (46.67%)30 (100%)[49]
Liu78Cough, fever, and respiratory tract infection symptomsNasopharyngeal swabs78 (100%)[50]
Song51The most common symptoms were fever (49 of 51, 96%) and cough (24 of 51, 47%). Other symptoms included myalgia or fatigue (16 of 51, 31%), mild headache and dizziness (eight of 51, 16%), and diarrhea (five of 51, 10%)51 (100%)[51]
Wu8061/80 (76%) of patients had fever, 58/80 (73%) of patients had cough, 11/80 (14%) of patients had expectoration, 5/80 (6%) of patients had chest pain, 13/80 (16%) of patients had muscle ache, 7/80 (9%) of patients had abdominal pain or diarrhea, 9/80 (11%) of patients had pharyngeal discomfort, 8/80 (10%) of patients had dizziness or headache, 7/80 (9%) of patients had dyspnea, and 3/80 of patients (4%) had blood in sputumThroat swabs or lower respiratory tract blood samples80 (100%)[52]
Xia30Respiratory or blood specimens
Tears and conjunctival secretions (conjunctival swab)
Sputum sample
1 patient had positive results in conjunctival swab samples and sputum samples (3%)29 patients had negative conjunctival swab samples (97%)[53]
Xie167Case 1: fever and mild cough
Case 2: fever of 39°C
Case 3: cough, dizziness, and debility, but had no fever
Case 4: fever
Case 5: fever
In 7 (4%), CT was initially negative while RT-PCR was positive/in 155 (93%), both RT-PCR and CT were concordant for COVID-195 (3%) initially had negative RT-PCR but positive chest CT/in 155 (93%), both RT-PCR and CT were concordant for COVID-19[54]
Zhang140The most commonly experienced symptoms were fever (91.7%), followed by cough (75%), fatigue (75%), and chest tightness or dyspnea (36.7%). 39.6% of them complained of gastrointestinal symptoms, including nausea, diarrhea, poor appetite, abdominal pain, belching, and emesisPharyngeal swab140 (100%)[55]
Zhao101Fever: 79 (78.2%)
Cough: 63 (62.4%)
Myalgia or fatigue: 17 (16.8%)
Sore throat: 12 (11.9%)
Dyspnea: 1 (1.0%)
Diarrhea: 3 (3.0%)
Nausea and vomiting: 2 (2.0%)
More than one symptom: 67 (66.3%)
None: 2 (2.0%)
101 (100%)[56]
Feng15Five of the 15 children were febrile, and 10 were asymptomaticNasal or pharyngeal swab samples15 (100%)[57]
Li83Fever 72 (86.7%), cough 65 (78.3%), expectoration 15 (18.1%), and myalgia 15 (18.1%). Less common symptoms were headache, dyspnea, abdominal pain/diarrhea, pharyngeal discomfort, and chest pain83 (100%)[58]
Kim28Cough (28.6%), sore throat (28.6%), fever (25.0%), diarrhea (10.7%) myalgia, and headache (7, 25.0%)RT-PCR: nasopharyngeal and oropharyngeal swab with or without sputum28 (100%)E gene[59]
Chen42Fever (85.71%), dry cough (52.38%), fatigue (52.38%), myalgia (23.81%), and dyspnea (21.43%). Sputum production (16.67%), pharyngalgia (14.29%), headache or dizziness (11.9%), diarrhea (16.67%), abdominal pain (11.95%), nausea (9.52%), and vomiting (7.14%)RT-PCR: pharyngeal swab, stool, and urinePharyngeal swab 42 (100%)[60]
Stool 28 (66.67%)14 (33.33%)
Urine 32 (76.19%)10 (23.81%)
Huang30Fever (84%), cough (72%), chills (24%), fatigue (40%), myalgia (12%), and loss of appetite (40%)RT-PCR30 (100%)[61]
Cheng33Fever (72.7%), cough (63.6%), muscle ache (27.3%), diarrhea (9.1%), sore throat (9.1%), and sputum (27.3%)Real-time RT-PCR: throat swab11 (33.3%)22 (66.7%)[62]
Himoto21Real-time RT-PCR6 (29%)15 (71%)[63]
Lei14Fever (50%), cough (50%), headache (14%), fatigue (21%), body soreness (7%), and diarrhea (21%)Real-time RT-PCR: sputum14 (100%)[64]
Caruso158Fever (61%), cough (56%), and dyspnea (33%)Real-time RT-PCR: nasopharyngeal and oropharyngeal swabs62 (39%)96 (61%)[65]
Chan15Real-time RT-PCR respiratory tract specimen, urine, rectal swab, and feces15 (100%)RdRp, Hel, S, and N genes of SARS-CoV-2[66]
Chen249Fever (87.1%), cough (36.5%), fatigue (39 (15.7%)), dizziness and headache (11.2%), sore throat (6.4%), rhinorrhea (6.8%), diarrhea (3.2%), and inappetence 8 (3.2%)PCR: upper respiratory tract specimens throat swab samples249 (100%)[67]
Albano65RT-PCR5 (7.7%)[68]
Chao Yan130Bronchoalveolar swabs and fluid58 (44.6%)72 (55.4%)orf1ab-4 and S-123[69]
Liang Su14Fever (57.1%), cough (35.7%), chest tightness/pain (21.4%), fatigue (21.4%), and sore throat (7.1%)Sputum and nasopharyngeal swabs14 (100%)ORF1ab/N[70]
Yun Ling66Fever, cough, and dyspneaOropharyngeal swabs stool, urine, and blood specimens11 (17%)55 (83%)[71]
Kelvin Kai-Wang To30Fever in 22 patients (96%), followed by cough in five (22%), chills in four (17%), and dyspnea in four (17%)Blood, urine, posterior oropharyngeal saliva, and rectal swabs23 (77%)7 (23%)In-house reverse transcriptase quantitative
PCR (RT-qPCR) targeting the SARS-CoV-2 RNA-dependent-RNA-polymerase-helicase gene region
[72]
Lu Lin95Fever or respiratory symptoms
Diarrhea: 23 (24.2%)/anorexia: 17 (17.9%)/nausea: 17 (17.9%)/vomiting: 4 (4.2%)/vomiting: 2 (2.1%)
Pharyngeal swab58 (61%)37 (39%)ORF1ab/N[73]
Yinxiaohe Sun788Sputum, nasopharyngeal swabs, or throat swabs54 (7%)734 (93%)[74]
Chunqin Long36Fever (36/36, 100%), cough (27/36, 75.0%), myalgia or fatigue (14/36, 38.9%), and nausea or diarrhea (6/36, 16.6%)30 (83%)6 (17%)[75]
Feng Pan21Fever (86%) and cough (57%)21 (100%)[76]
Rui Liu4880Fever (100%), cough and hard breath, or bothNasal and pharyngeal swabs1875 (38.5%)3005 (61.5%)1ab (ORF1ab) and nucleocapsid protein (NP) genes[77]
Xiaobing Wang1012Fever (761 of 1012, 75.2%), cough (531 of 1012, 52.4%), dyspnea (231 of 1012, 22.8%), expectoration (220 of 1012, 21.7%), chills (182 of 1012, 18.0%), myalgia (170 of 1012, 16.8%), headache (152 of 1012, 15.0%), diarrhea (152 of 1012, 15.0%), sore throat (144 of 1012, 14.2%), nasal congestion (69 of 1012, 6.9%), runny nose (57 of 1012, 5.6%), abdominal pain (37 of 1012, 3.7%), and vomiting (36 of 1012, 3.6%)Sputum or nasopharynx swabs311 (30.5%)701 (69.5%)[78]
Jian Wu80Fever: 63 (78.75%), cough: 51 (63.75%), and shortness of breath: 30 (37.5%). Muscle ache: 18 (22.50%), headache and mental disorder symptoms: 13 (16.25%), diarrhea: 1 (1.25%), and chest pain: 3 (3.75%)Nose swab and/or throat swab80 (100%)Nucleocapsid (N) gene and open reading frame lab (ORF1ab) gene[79]