Discovery of a Novel Lineage Burkholderia cepacia ST 1870 Endophytically Isolated from Medicinal Polygala paniculata Which Shows Potent In Vitro Antileishmanial and Antimicrobial Effects
Table 4
Genomic comparisons between Burkholderia cepacia COPS and B. cepacia strains based on genome comparisons and multilocus sequence analysis.
Genome comparisons
Multilocus sequence analysis
Strain
GC (%)
ANIm (%)
ANIb (%)
dDDH (%)
Tetra
Locus
Identity (%)
Allele
Burkholderia cepacia RB-39
65.91
93.68
91.82
51.00
0.99738
atpD
100
atpD 235
Burkholderia cepacia DDS 7H-2
67.05
92.01
90.20
43.30
0.99559
gltB
100
gltB 707
Burkholderia cepacia DWS 16B-4
67.07
92.01
90.24
43.30
0.99561
gyrB
99.7797
gyrB 1041
Burkholderia cepacia LMG 16656
66.88
92.07
90.08
43.60
0.99553
lepA
99.4962
lepA 3
Burkholderia cepacia MSMB1302
66.81
96.22
95.19
67.00
0.99924
phaC
99.4805
phaC 279
Burkholderia cepacia LK13
66.47
98.72
98.04
87.80
0.99948
recA
100
recA 1
Burkholderia cepacia NBRC 14074
66.67
97.56
96.86
77.20
0.99929
trpB
100
trpB 21
Burkholderia cepacia NCTC10743
66.60
97.56
96.86
77.10
0.99932
Burkholderia cepacia ATCC 25416
66.58
97.56
96.87
77.10
0.99935
Burkholderia cepacia GG4
66.68
91.30
88.62
36.80
0.99608
Burkholderia cepacia JBK9
66.82
92.35
90.59
45.00
0.99686
Burkholderia cepacia MSMB591WGS
66.43
98.71
98.13
87.40
0.99932
Burkholderia cepacia MSMB1224WGS
66.86
97.94
97.23
80.70
0.99892
Burkholderia cepacia LO6
66.99
89.93
86.75
36.20
0.97175
Burkholderia sp. LK4
66.46
98.78
98.05
87.80
0.99950
Burkholderia reimsis BE51
66.37
98.72
98.05
86.50
0.99938
Burkholderia lata LK27
66.76
98.53
96.91
87.90
0.99926
Bold values based on ANI, dDDH, and TETRA (threshold of ≥ 96%, ≥ 70%, and TETRA > 0.999%, respectively) represent that strains belong to the same genomic species, whereas in multilocus sequence analysis, bold values represent new alleles of housekeeping genes within Burkholderia spp.
