| Number | Alkaloid | Precursor ion | Major fragments obtained at various CID voltage (V) with abundances in different intensities (%) |
| (1) | Berberine | 336 | 10 V | 336 (100), 337 (27), 321 (5) | 20 V | 336 (100), 321 (43), 292 (22) | 30 V | 320 (100), 292 (73), 321 (69), 306 (26) | 40 V | 320 (100), 278 (55), 292 (49), 318 (31), 306 (25) | 50 V | 278 (100), 318 (38), 292 (31), 279 (2) | 60 V | 278 (100), 263 (31), 249 (27), 220 (26) | 80 V | 191 (100), 220 (47), 204 (46), 192 (38) |
| (2) | Magnoflorine | 342 | 10 V | 342 (100), 343 (31), 297 (12), 58 (10) | 20 V | 297 (100), 265 (85), 342 (78), 58 (71) | 30 V | 58 (100), 265 (29), 297 (16) | 40 V | 58 (100), 191 (31), 222 (29) | 50 V | 58 (100), 179 (20), 192 (10) | 60 V | 58 (100), 165 (56), 176 (20) | 80 V | 58 (100), 165 (50), 178 (40) |
| (3) | Sanguinarine | 332 | 10 V | 332 (100), 333 (27), 334 (3) | 20 V | 332 (100), 333 (24), 304 (7) | 30 V | 332 (100), 274 (41), 304 (39), 317 (34) | 40 V | 274 (100), 304 (60), 246 (52), 216 (30) | 50 V | 304 (100), 216 (55), 246 (48), 189 (22) | 60 V | 246 (100), 216 (60), 260 (40), 189 (30) | 80 V | 189 (100), 202 (85), 176 (75) |
| (4) | Berbamine | 609 | 10 V | 609 (100), 610 (38), 611 (35), 612 (16) | 20 V | 609 (100), 611 (76), 206 (29), 579 (12) | 30 V | 609 (100), 611 (80), 192 (80), 578 (69), 206 (64), 296 (45) | 40 V | 206 (100), 192 (93), 174 (36), 190 (34), 296 (34) | 50 V | 206 (100), 192 (90), 296 (52), 239 (41) | 60 V | 206 (100), 192 (62), 174 (47), 296 (40) | 80 V | 160 (100), 191 (94), 165 (85), 174 (84) |
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