Research Article

Study on Molecular Recognition between Euphorbia Factor L713283 and β-Tubulin via Molecular Simulation Methods

Table 1

Energy components contributing to the binding free energy (kJ/mol).

ItemReceptorLigandComplexDelta

ELE−51089.9 ± 385.7−339.7 ± 3.1−51489.9 ± 388.1−60.4 ± 9.2
VDW−7806.0 ± 169.760.2 ± 19.9−7968.7 ± 179.4−222.9 ± 12.3
INT36758.4 ± 230.5547.7 ± 36.537306.0 ± 234.30.0 ± 0.0
GBSUR558.7 ± 4.923.6 ± 0.2551.6 ± 4.9−30.7 ± 0.6
GB−25766.8 ± 296.4−79.6 ± 2.9−25701.2 ± 301.9145.2 ± 8.5
TSTOT19675.9 ± 71.3310.6 ± 0.019858.4 ± 68.8−128.0 ± 82.3
−40.8

Electrostatic energy. The van der Waals energy. Bond, angle, and dihedral energies. Nonpolar solvent free energy. Polar solvent free energy. Temperature × entropy. Binding free energy (ELE + VDW + INT + GBSUR + GB − TSTOT). Difference (complex − ligand − receptor).