Transcriptome Profiles Using Next-Generation Sequencing Reveal Liver Changes in the Early Stage of Diabetes in Tree Shrew (Tupaia belangeri chinensis)

Table 1

Transcripts assembled with Cufflinks and percentage from both the control and diabetic groups.

Code	Control group		Diabetic group
	Number	%	Number	%
e	1249	2.2	1611	2.5
=	19938	35.6	19904	31.2
x	556	1	657	1
s	2	0	3	0
j	18793	33.6	20376	32
c	3	0	4	0
u	6997	12.5	9910	15.5
p	941	1.7	1101	1.7
.	3251	5.8	3251	5.1
o	1171	2.1	1212	1.9
i	3084	5.5	5719	9
Total	55985	100	63748	100

Class codes described by Cuffcompare: “=”: exactly equal to the reference annotation; “c”: contained in the reference annotation; “e”: possible pre-mRNA molecule; “i”: an exon falling into an intron of the reference; “j”: new isoforms; “o”: unknown, generic overlap with reference; “p”: possible polymerase run-on fragment; “s”: an intron of the transfrag overlaps a reference intron on the opposite strand; “u”: unknown intergenic transcript; “x”: exonic overlap with reference on the opposite strand; “.”: tracking file only, which indicates multiple classifications.