Assessment of the Bacterial Pollution and Detection of Antibiotic Resistance Genes in Benin: Case of the Hydrographic Channel Complex Cotonou-Nokoué Lake

Table 1

Primers used for the detection of resistance and virulence genes.

Genes	Primers	Sequence 5′-3′	References
TEM	TEM F	ATGAGTATTCAACATTTCCGC	[16]
	TEM R	CAATGCTTAATCAGTGAGG
SHV	SHV F	AAGATCCACTATCGCCAGCAG	[16]
	SHV R	ATTCAGTTCCGTTTCCCAGCGG
CTX-M-15	CTX-M-15F	CACACGTGGAATTTAGGGACT	[16]
	CTX-M-15R	GCCGTCTAAGGCGATAAACA
IMP	IMP F	GGAATAGAGTGGCTTAATTC	[17]
	IMP R	GGTTTAACAAAACAACCACC
VIM	VIM F	GCACTTCTCGCGGAGATTG	[18]
	VIM R	CGACGGTGATGCGTACGTT
GES	GES F	GCAATGTGCTCAACGTTCAAG	[19]
	GES R	GTGCCTGAGTCAATTCTTTCAAAG
NDM	NDM F	GGCCACACCAGTGACAATATCA	[20]
	NDM R	CAGGCAGCCACCAAAAGC
KPC	KPC F	GCCGCCAATTTGTTGCTGAA	[21]
	KPC R	GCCGGTCGTGTTTCCCTTT
OXA-48	OXA-48F	TGTTTTTGGTGGCATCGAT	[22]
	OXA-48R	GTAAMRATGCTTGGTTCGG
qnrA	qnrA F	AGGATTTCTCACGCCAGGATT	[23]
	qnrA R	CCGCTTTCAATGAAACTGCAA
OXA-23	OXA-23 F	TTTACTTGCTATGTGGGTTGCT	[24]
	OXA-23 R	ATCACCTGATTATGTCCTTGA
van A	van A F	GGGCTGTGAGGTCGGTTG	[25]
	van A R	TTCAGTACAATGCGGCCGTTA
van B	van B F	TTGTCGGCGAAGTGGATCA	[25]
	van B R	AGCCTTTTTCCGGCTCGTT
mecA	mecA F	TAATTATCGCAGCAGCTGGTTC	[25]
	mecA R	GTTCCCAAACGGAGTATAAGAGTG
fimH	fimH F	TACTGCTGATGGGCTGGTC	[26]
	fimH R	GGCAATGCTTATTACAGGATGTGC