Research Article

2-Way k-Means as a Model for Microbiome Samples

Table 1

The most abundant OTU per cluster. Because the 16S rDNA data maps multiple sequences to the same genus level, we use subscripts to denote different OTUs with the same genus.

Family; genusc1c2c3c4c5

Lactobacillaceae; Lactobacillus155341701
Lactobacillaceae; Lactobacillus20032690
Bifidobacteriaceae; Gardnerella22701301
Lachnospiraceae; unclassified10040150
Lactobacillaceae; Lactobacillus3204420
Lactobacillaceae; Lactobacillus4243211
Leptotrichiaceae; Sneathia1803300
Prevotellaceae; Prevotella1203000
Prevotellaceae; Prevotella2301601
Unclassified; unclassified2211502
Prevotellaceae; Prevotella300401
Leptotrichiaceae; Sneathia210201
Lachnospiraceae; unclassified300103
Streptococcaceae; Streptococcus1001800
Veillonellaceae; unclassified400000
Streptococcaceae; Streptococcus2011500
Mycoplasmataceae; Mycoplasma01700
Bifidobacteriaceae; Bifodobacterium00900
Fusobacteriaceae; Fusobacterium00700
Enterobacteriaceae; unclassified500800