2-Way k-Means as a Model for Microbiome Samples

Table 2

The most abundant OTUs per cluster pair.

Genus	c12	c13	c14	c15	c21	c23	c24	c25	c31	c32	c34	c35	c41	c42	c43	c45	c51	c52	c53	c54
Lactobacillus1	5	0	0	0	113	69	57	295	0	15	2	0	0	0	0	0	0	1	0	0
Lactobacillus2	0	0	0	0	0	0	0	0	0	0	3	0	14	60	27	168	0	0	0	0
Gardnerella	75	32	95	25	0	0	0	0	10	0	3	0	0	0	0	0	1	0	0	0
Unclassified1	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	54	23	23	50
Lactobacillus3	0	2	0	0	0	0	0	0	6	7	31	0	0	0	2	0	0	0	0	0
Lactobacillus4	1	1	0	0	0	4	0	0	4	4	23	1	0	1	0	0	1	0	0	0
Sneathia1	0	8	0	0	0	0	0	0	22	2	4	5	0	0	0	0	0	0	0	0
Prevotella1	0	2	0	0	0	0	0	0	9	4	17	0	0	0	0	0	0	0	0	0
Prevotella2	0	0	0	3	0	0	0	0	15	0	0	1	0	0	0	0	0	0	1	0
Unclassified2	2	0	0	0	0	1	0	0	8	6	0	1	0	0	0	0	1	0	1	0
Prevotella3	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	1	0	0	0
Sneathia2	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0
Unclassified3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	1	0
Streptococcus2	0	0	0	0	0	0	0	0	2	2	14	0	0	0	0	0	0	0	0	0
Unclassified4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Streptococcus2	0	0	0	0	0	1	0	0	2	2	11	0	0	0	0	0	0	0	0	0
Mycoplasma	0	0	0	0	1	0	0	0	5	2	0	0	0	0	0	0	0	0	0	0
Bifodobacterium	0	0	0	0	0	0	0	0	1	1	7	0	0	0	0	0	0	0	0	0
Fusobacterium	0	0	0	0	0	0	0	0	1	2	4	0	0	0	0	0	0	0	0	0
Unclassified5	0	0	0	0	0	0	0	0	0	2	5	1	0	0	0	0	0	0	0	0