Geometry Dynamics of α-Helices in Different Class I Major Histocompatibility Complexes

Table 2

Median RMSD values of case studies.

	Orange	Red	Red versus orange
	Median RMSD	Median RMSD	Median RMSD
B4402 G-ALPHA2	0.0870 nm	0.0682 nm	0.1350 nm
B4403 G-ALPHA1	0.0789 nm	0.0671 nm	0.1170 nm
B4405 G-ALPHA1	0.0592 nm	0.0556 nm	0.0794 nm

We compared helix conformations between different phases of the simulation, that is, before and after an inflection point or continous decrease/increase in the curvature integral (see Figure 7, upper row). Median values of the RMSD distribution are shown in this table.