Journal of Immunology Research / 2016 / Article / Tab 3

Review Article

An Introduction to B-Cell Epitope Mapping and In Silico Epitope Prediction

Table 3

List of web available tools for discontinuous/conformational B-cell epitope prediction.

ToolSource (URL)Input dataRef.

DiscoTopehttp://www.cbs.dtu.dk/services/DiscoTope-2.0/PDB ID or PDB file[22, 71]
BePro (PEPITO)http://pepito.proteomics.ics.uci.edu/PDB ID or PDB file[79]
ElliProhttp://tools.immuneepitope.org/ellipro/FASTA or Swiss-Prot ID[83]
SEPPAhttp://badd.tongji.edu.cn/seppa/PDB ID or PDB file[81]
EPITOPIAhttp://epitopia.tau.ac.il/FASTA/PDB ID or PDB file[95]
CBTOPEhttp://www.imtech.res.in/raghava/cbtope/FASTA or FASTA file[85]
EPCEShttp://sysbio.unl.edu/EPCES/PDB ID or PDB file[96]
EPSVRhttp://sysbio.unl.edu/EPSVR/PDB ID or PDB file[97]
PEASEhttp://www.ofranlab.org/PEASEAg PDB ID or PDB file
Ab FASTA or FASTA file
[88]
EpiPredhttp://opig.stats.ox.ac.uk/webapps/sabdab-sabpred/EpiPred.phpPDB ID or PDB file[72]