RNA-Seq Based Transcriptome Analysis of the Type I Interferon Host Response upon Vaccinia Virus Infection of Mouse Cells

Table 1

Alignment of Illumina reads and number of differentially expressed genes from infected cells with the indicated viruses.

	PLWUV VACV		VACV 4 hpi		VACV 9 hpi		VACVB18 4 hpi		VACVB18 9 hpi
Total reads aligned	150.810.958		117.443.318		181.794.658		139.017.860		155.220.273
Viral reads	260.091 (0.17%)		37.708.314 (32.1%)		144.727.059 (79.6%)		25.497.885 (18.4%)		90.326.955 (58.2%)
Cellular SDEGs	Up	Down	Up	Down	Up	Down	Up	Down	Up	Down
	18	24	887	1341	2398	3753	660	1013	1238	2309

Aligned to either mouse or VACV Western Reserve genomes.
Aligned exclusively to VACV Western Reserve genome.