Review Article
The Dynamic Interplay between the Gut Microbiota and Autoimmune Diseases
Table 1
Autoimmune diseases and alteration of the gut microbiota composition.
| Diseases | Species | Methods | Increasing microbiota species | Decreasing microbiota species | References |
| RA | Mouse | 16S rRNA gene sequencing | Desulfovibrio Mucispirillum Helicobacter Lachnospiraceae Rikenellaceae_RC9 | S24-7 Rikenella | [60] | Human | 16S rRNA sequencing | | Euryarchaeota | [54] | Human | 16S ribosomal DNA | Collinsella | Actinobacteria | [53] | Human | Denaturing gradient gel electrophoresis | Lactobacillus | | [57] | Mouse | 16S rRNA sequencing | Bacteroidaceae Lachnospiraceae S24-7 | | [47] |
| SLE | Mouse, human | 16S rDNA sequencing | Lactobacillus reuteri | | [62] | Human | 16S rRNA sequencing | Proteobacteria | Ruminococcaceae | [61] | Human | 16S ribosomal RNA gene sequencing | Bacteroides | Firmicutes/Bacteroidetes ratio | [112] | Human | 16S rRNA sequencing | Streptococcus Lactobacillus S. anginosus L. mucosae Megasphaera | Faecalibacterium F. prausnitzii Cryptophyta Roseburia Bifidobacterium | [66] | Human | 16S rRNA sequencing | Ruminococcus gnavus | | [67] | Human | Metagenomic analyses | | Firmicutes/Bacteroidetes ratio | [69] | Mouse | 16S rDNA sequencing | Lachnospiraceae | Lactobacillus spp. | [47] |
| SpA | Human | 16S rRNA gene- and ITS2-based DNA sequencing | Escherichia-Shigella Veillonella Lachnospiraceae NK4A136 group Dothideomycetes | Prevotella strain 9 Megamonas Fusobacterium Agaricales | [79] | Human | 16S ribosomal RNA amplicon sequencing | Dialister | | [83] | Human | 16S ribosomal RNA gene sequencing | Ruminococcus gnavus | | [84] |
| IBD | Human | Metagenomic sequencing | Escherichia coli | Eubacterium rectale Faecalibacterium prausnitzii | [101] | Human | Tag-sequencing the 16S rRNA gene | | Roseburia spp. | [93] | Human | 16S rRNA sequencing | Actinobacteria Proteobacteria (Enterobacteriaceae) | Firmicutes (Clostridiales) | [94] | Human | 16S rRNA sequencing | Proteobacteria | Firmicutes Actinobacteria | [95] | Dog | 16S rRNA gene next-generation sequencing | Paraprevotellaceae Porphyromonas | | [91] |
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