Research Article

Attenuated Subcomponent Vaccine Design Targeting the SARS-CoV-2 Nucleocapsid Phosphoprotein RNA Binding Domain: In Silico Analysis

Table 2

The B cell discontinuous epitopes of the SARS-CoV-2 nucleocapsid phosphoprotein.

No.ResiduesNumber of residuesScore3d structure

1D:A56, D:L57, D:T58, D:Q59, D:H60, D:G61, D:K62, D:E63, D:D64, D:L65, D:K66, D:F67, D:P68, D:R69, D:G70, D:Q71, D:G72, D:V73, D:P74, D:Q84, D:Y88, D:R90, D:A91, D:T92, D:R93, D:R94, D:I95, D:R96, D:G97, D:G98, D:D99, D:K101, D:M102, D:K103, D:D104, D:L105, D:S106, D:P107, D:R108, D:W109, D:G117, D:P118, D:E119, D:A120, D:G121, D:L122, D:P123, D:Y124, D:G125, D:A126, D:N127, D:K128, D:D129, D:G130, D:I131, D:I132, D:W133, D:V134, D:A135, D:T136, D:E137, D:G138, D:A139, D:L140, D:N141, D:T142, D:P143, D:Q161, D:L162, D:P163, D:Q164, D:G165, D:T166, D:T167, D:L168, D:P169, D:K170, D:G171, D:F172, D:Y173, D:A174810.745Figure 4(b)
2B:N48, B:N49, B:T50, B:A51, B:S52, B:W53, B:F54, B:T55, B:A56, B:T58, B:Q59, B:H60, B:G61, B:P74, B:A91, B:T92, B:R93, B:R94, B:I95, B:R96, B:G97, B:D99, B:G100, B:K101, B:M102, B:K103, B:D104, B:L105, B:S106, B:P107, B:R108, B:Y110, B:L114, B:G115, B:T116, B:G117, B:P118, B:E119, B:A120, B:T142, B:P143, B:K144, B:D145, B:H146, B:I147, B:G148, B:T149, B:R150, B:N151, B:P152, B:A153, B:N154, B:N155, B:A156, B:A157, B:I158, B:V159, B:L160, B:G171590.692Figure 4(c)
3C:P47, C:N48, C:N49, C:T50, C:A51, C:W53, C:Q59, C:H60, C:G61, C:K62, C:E63, C:D64, C:L65, C:K66, C:F67, C:P68, C:R69, C:G70, C:Q71, C:G72, C:V73, C:S79, C:S80, C:P81, C:D82, C:D83, C:Q84, C:I85, C:G86, C:Y87, C:R89, C:R90, C:A91, C:T92, C:R93, C:R94, C:I95, C:R96, C:G98, C:D99, C:G100, C:K101, C:M102, C:K103, C:D104, C:L105, C:S106, C:P107, C:Y113, C:L114, C:G115, C:T116, C:G117, C:P118, C:E119, C:A120, C:G121, C:L122, C:P123, C:Y124, C:G125, C:A126, C:N127, C:K128, C:D129, C:G130, C:I131, C:I132, C:W133, C:V134, C:A135, C:T136, C:E137, C:G138, C:A139, C:L140, C:N141, C:T142, C:P143, C:K144, C:D145, C:H146, C:I147, C:G148, C:T149, C:R150, C:N151, C:P152, C:A153, C:N154, C:N155, C:T166, C:G171930.683Figure 4(d)
4A:H60, A:G61, A:K62, A:E63, A:D64, A:L65, A:K66, A:F67, A:P68, A:R69, A:G70, A:Q71, A:G72, A:V73, A:S79, A:S80, A:P81, A:D82, A:Q84, A:A135, A:T136, A:E137, A:G138, A:A139, A:L140, A:N141, A:T142, A:Q161, A:L162, A:P163, A:Q164, A:G165, A:T166, A:T167, A:L168, A:P169, A:K170, A:G171, A:Y173390.658Figure 4(e)
5B:I75, B:N76, B:T77, B:N78, B:S79, B:S8060.617Figure 4(f)