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Author (year) | Increased bacteria | Decreased bacteria | Technology | Reference |
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Alpizar-Rodriguez et al. (2019) | Prevotellaceae, Prevotella spp. | | 16S rRNA sequencing | [56] |
Chen et al. (2016) | Collinsella aerofaciens and Eggerthella lenta | Faecalibacterium | 16S ribosomal DNA | [57] |
Chiang et al. (2019) | Verrucomicrobia, Akkermansia | | 16S rRNA sequencing | [58] |
Eerola et al. (1994) | | Anaerobic bacteria: Bacteroides, Prevotella, and Porphyromonas | Gas-liquid chromatography of bacterial CFAs | [59] |
Kishikawa et al. (2019) | Prevotella | | Whole-genome shotgun | [60] |
Liu et al. (2013) | Lactobacillus | | Quantitative real-time PCR | [61] |
Lee et al. (2019) | Lactobacilli, Prevotella | Bacteroides, Bifidobacterium, Bacteroidetes/Firmicutes | 16S rRNA sequencing | [62] |
Muñiz Pedrogo et al. (2019) | Clostridiaceae | | Metagenomic shotgun sequencing | [63] |
Maeda et al. (2016) | Prevotella (Prevotella copri) | Bacteroides | 16S rRNA sequencing | [39] |
Rodrigues et al. (2019) | Bacteroides, Prevotella | Clostridium leptum | qPCR | [64] |
Shinebaum et al. (1987) | Clostridium perfringens, coliform | | Estimation of bacterial counts in fecal culture | [65] |
Sun et al. (2019) | Bacteroides, Escherichia-Shigella | Lactobacillus, Alloprevotella, Enterobacter, Odoribacter | 16S rRNA sequencing | [66] |
Scher et al. (2013) | Prevotella (Prevotella copri) | Bacteroides | 16S rRNA sequencing | [67] |
Vaahtovuo et al. (2008) | | Bacteroides-Porphyromonas-Prevotella, Bacteroides fragilis, Eubacterium rectale-Clostridium coccoides | Flow cytometry,16S rRNA hybridization, and DNA staining | [68] |
Zhang et al. (2015) | Lactobacillus salivarius | Haemophilus spp. | Metagenomic shotgun sequencing | [69] |
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