| Biological process | No. of genes | P-value | Related genes |
| Pathways in cancer | 224 | <0.005 | APPL1, FZD10, LPAR6, GNA13, CXCL12, ABL1, PIK3R5, AKT3, MTOR, STAT5A, ARAF, BCL2, SMAD4, TGFBR1, MSH3, PIAS2… |
| Focal adhesion | 122 | <0.005 | EGF, EGFR, PIK3R5, ITGA11, LAMC3, PAK4, DOCK1, ROCK1, GRF2, MAPK8, JUN, BLC2, ELK1, BRAF, RAPGEF1, CRK, SOS1… |
| HIF 1 signaling pathway | 67 | <0.005 | AKT2, AKT3, ANGPT1, ARNT, BCL2, CAMK2A, CAMK2B, EGLN1, ENO3, EP300, EPO, PIK3CD, PIK3CG, TEK, TF, VHL… |
| Proteoglycans in cancer | 116 | <0.005 | ELK1, ROCK1, TIAM1, ITPR1, DROSHA, HOXD10, PIK3R5, AKT3, PDPK1, MTOR, PDCD4, COL21A1, ARAF, HGF, FRS2, SOS1, WNT16… |
| Regulation of actin cytoskeleton | 118 | <0.005 | F2, GNA13, ARAF, PIK3R5, SOS1, EGFR, EGF, ITGA11, CHRM1, FGD1, VAV3, MSN, ACTN4, MYLK, MYH9, CFL1, ENAH, WASF1… |
| Central carbon metabolism in cancer | 42 | <0.005 | AKT2, FGFR1, FLT3, GCK, KIT, MTOR, NRAS, NTRK1, NTRK3, PDGFRA, PFKM, PGAM2, PIK3CD, RET… |
| Vascular smooth muscle contraction | 76 | <0.005 | ACTA2, ADRA1A, AGTR1, BRAF, CACNA1C, EDNRA, GNA12, GNAS, ITPR1, KCNMA1, MRVI1, PLA2G12A, PLCB4, RAMP3, ROCK1… |
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