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Journal of Pathogens
Volume 2015 (2015), Article ID 809014, 10 pages
http://dx.doi.org/10.1155/2015/809014
Review Article

General Overview on Nontuberculous Mycobacteria, Biofilms, and Human Infection

Sonia Faria, Ines Joao, and Luisa Jordao

National Institute of Health Dr. Ricardo Jorge, Avenida Padre Cruz, 1649-016 Lisboa, Portugal

Received 28 August 2015; Accepted 15 October 2015

Academic Editor: Nongnuch Vanittanakom

Copyright © 2015 Sonia Faria et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Linked References

  1. T. P. Primm, C. A. Lucero, and J. O. Falkinham III, “Health impacts of environmental mycobacteria,” Clinical Microbiology Reviews, vol. 17, no. 1, pp. 98–106, 2004. View at Publisher · View at Google Scholar · View at Scopus
  2. K. Tsuyuguchi, K. Suzuki, and M. Sakatani, “Epidemiology of infection by nontuberculous mycobacteria,” Respiration and Circulation, vol. 52, no. 6, pp. 561–564, 2004. View at Google Scholar · View at Scopus
  3. J. O. Falkinham III, “Surrounded by mycobacteria: nontuberculous mycobacteria in the human environment,” Journal of Applied Microbiology, vol. 107, no. 2, pp. 356–367, 2009. View at Publisher · View at Google Scholar · View at Scopus
  4. W. Hoefsloot, J. Van Ingen, C. Andrejak et al., “The geographic diversity of nontuberculous mycobacteria isolated from pulmonary samples: an NTM-NET collaborative study,” European Respiratory Journal, vol. 42, no. 6, pp. 1604–1613, 2013. View at Publisher · View at Google Scholar · View at Scopus
  5. D. E. Griffith, T. Aksamit, B. A. Brown-Elliott et al., “An official ATS/IDSA statement: diagnosis, treatment, and prevention of nontuberculous mycobacterial diseases,” American Journal of Respiratory and Critical Care Medicine, vol. 175, no. 4, pp. 367–416, 2007. View at Publisher · View at Google Scholar · View at Scopus
  6. E. Tortoli, “Clinical manifestations of nontuberculous mycobacteria infections,” Clinical Microbiology and Infection, vol. 15, no. 10, pp. 906–910, 2009. View at Publisher · View at Google Scholar · View at Scopus
  7. C. Piersimoni and C. Scarparo, “Pulmonary infections associated with non-tuberculous mycobacteria in immunocompetent patients,” The Lancet Infectious Diseases, vol. 8, no. 5, pp. 323–334, 2008. View at Publisher · View at Google Scholar · View at Scopus
  8. C. R. Horsburgh Jr., J. Gettings, L. N. Alexander, and J. L. Lennox, “Disseminated Mycobacterium avium complex disease among patients infected with human immunodeficiency virus, 1985–2000,” Clinical Infectious Diseases, vol. 33, no. 11, pp. 1938–1943, 2001. View at Publisher · View at Google Scholar · View at Scopus
  9. J. Esteban, M. García-Pedrazuela, M. C. Muñoz-Egea, and F. Alcaide, “Current treatment of nontuberculous mycobacteriosis: an update,” Expert Opinion on Pharmacotherapy, vol. 13, no. 7, pp. 967–986, 2012. View at Publisher · View at Google Scholar · View at Scopus
  10. M. Shamaei, M. Marjani, P. Farnia, P. Tabarsi, and D. Mansouri, “Human infections due to Mycobacterium lentiflavum: first report in Iran,” Iranian Journal of Microbiology, vol. 2, no. 1, pp. 27–29, 2010. View at Google Scholar
  11. K. A. Al-Anazi, A. M. Al-Jasser, and W. K. Al-Anazi, “Infections caused by non-tuberculous mycobacteria in recipients of hematopoietic stem cell transplantation,” Frontiers in Oncology, vol. 4, article 311, 12 pages, 2014. View at Publisher · View at Google Scholar · View at Scopus
  12. G. El Helou, G. M. Viola, R. Hachem, X. Y. Han, and I. I. Raad, “Rapidly growing mycobacterial bloodstream infections,” The Lancet Infectious Diseases, vol. 13, no. 2, pp. 166–174, 2013. View at Publisher · View at Google Scholar · View at Scopus
  13. V. Kumar, T. K. Sachan, P. Sharma, and K. D. Rawat, “Ultrastructural morphologic changes in mycobacterial biofilm in different extreme condition,” Ultrastructural Pathology, vol. 39, no. 1, pp. 38–48, 2015. View at Publisher · View at Google Scholar · View at Scopus
  14. L. R. Johnson, “Microcolony and biofilm formation as a survival strategy for bacteria,” Journal of Theoretical Biology, vol. 251, no. 1, pp. 24–34, 2008. View at Publisher · View at Google Scholar · View at MathSciNet · View at Scopus
  15. G. Zhao, M. L. Usui, S. I. Lippman et al., “Biofilms and inflammation in chronic wounds,” Advances in Wound Care, vol. 2, no. 7, pp. 389–399, 2013. View at Publisher · View at Google Scholar
  16. L. C. Martínez and V. Vadyvaloo, “Mechanisms of post-transcriptional gene regulation in bacterial biofilms,” Frontiers in Cellular and Infection Microbiology, vol. 4, article 38, 2014. View at Publisher · View at Google Scholar · View at Scopus
  17. L. Hall-Stoodley, O. S. Brun, G. Polshyna, and L. P. Barker, “Mycobacterium marinum biofilm formation reveals cording morphology,” FEMS Microbiology Letters, vol. 257, no. 1, pp. 43–49, 2006. View at Publisher · View at Google Scholar · View at Scopus
  18. M. J. van der Werf, C. Ködmön, V. Katalinić-Janković et al., “Inventory study of non-tuberculous mycobacteria in the European Union,” BMC Infectious Diseases, vol. 14, article 62, 2014. View at Publisher · View at Google Scholar · View at Scopus
  19. B. Varghese, Z. Memish, N. Abuljadayel, R. Al-Hakeem, F. Alrabiah, and S. A. Al-Hajoj, “Emergence of clinically relevant non-tuberculous mycobacterial infections in Saudi Arabia,” PLoS Neglected Tropical Diseases, vol. 7, no. 5, Article ID e2234, 2013. View at Publisher · View at Google Scholar · View at Scopus
  20. S. Simons, J. van Ingen, P. Hsueh et al., “Nontuberculous mycobacteria in respiratory tract infections, eastern Asia,” Emerging Infectious Diseases, vol. 17, no. 3, pp. 343–349, 2011. View at Publisher · View at Google Scholar
  21. J. B. Greene, G. S. Sidhu, S. Lewin et al., “Mycobacterium avium-intracellulare: a cause of disseminated life-threatening infection in homosexuals and drug abusers,” Annals of Internal Medicine, vol. 97, no. 4, pp. 539–546, 1982. View at Publisher · View at Google Scholar · View at Scopus
  22. J. F. Desforges and C. R. Horsburgh, “Complex infection in the acquired immunodeficiency syndrome,” The New England Journal of Medicine, vol. 324, no. 19, pp. 1332–1338, 1991. View at Publisher · View at Google Scholar
  23. C. R. Horsburgh Jr. and R. M. Selik, “The epidemiology of disseminated nontuberculous mycobaterial infection in the acquired immunodeficiency syndrome (AIDS),” The American Review of Respiratory Disease, vol. 139, no. 1, pp. 4–7, 1989. View at Publisher · View at Google Scholar · View at Scopus
  24. S. D. Nightingale, L. T. Byrd, P. M. Southern, J. D. Jockusch, S. X. Cal, and B. A. Wynne, “Incidence of Mycobacterium avium-intracellulare complex bacteremia in human immunodeficiency virus-positive patients,” The Journal of Infectious Diseases, vol. 165, no. 6, pp. 1082–1085, 1992. View at Publisher · View at Google Scholar · View at Scopus
  25. V. Ausina, J. Barrio, M. Luquin et al., “Mycobacterium xenopi infections in the acquired immunodeficiency syndrome,” Annals of Internal Medicine, vol. 109, no. 11, pp. 927–928, 1988. View at Google Scholar · View at Scopus
  26. E. C. Bottger, “Mycobacterium genavense: an emerging pathogen,” European Journal of Clinical Microbiology and Infectious Diseases, vol. 13, no. 11, pp. 932–936, 1994. View at Publisher · View at Google Scholar · View at Scopus
  27. W. R. Butler, S. P. O'Connor, M. A. Yakrus et al., “Mycobacterium celatum sp. nov,” International Journal of Systematic Bacteriology, vol. 43, no. 3, pp. 539–548, 1993. View at Publisher · View at Google Scholar · View at Scopus
  28. A. Chocarro, A. G. Lopez, M. F. Breznes, A. Canut, J. Rodriguez, and J. M. Diego, “Disseminated infection due to Mycobacterium malmoense in a patient infected with human immunodeficiency virus,” Clinical Infectious Diseases, vol. 19, no. 1, pp. 203–204, 1994. View at Publisher · View at Google Scholar · View at Scopus
  29. D. Huminer, S. Dux, Z. Samra et al., “Mycobacterium simiae infection in Israeli patients with AIDS,” Clinical Infectious Diseases, vol. 17, no. 3, pp. 508–509, 1993. View at Publisher · View at Google Scholar · View at Scopus
  30. T. E. Kiehn and M. White, “Mycobacterium haemophilum: an emerging pathogen,” European Journal of Clinical Microbiology and Infectious Diseases, vol. 13, no. 11, pp. 925–931, 1994. View at Publisher · View at Google Scholar · View at Scopus
  31. K. M. Ries, G. L. White Jr., and R. T. Murdock, “Atypical mycobacterial infection caused by Mycobacterium marinum,” The New England Journal of Medicine, vol. 322, no. 9, p. 633, 1990. View at Google Scholar · View at Scopus
  32. M. C. Rodriguez-Barradas, J. Clarridge, and R. Darouiche, “Disseminated Mycobacterium fortuitum disease in an aids patient,” American Journal of Medicine, vol. 93, no. 4, pp. 473–474, 1992. View at Publisher · View at Google Scholar · View at Scopus
  33. B. Springer, E. Tortoli, I. Richter et al., “Mycobacterium conspicuum sp. nov., a new species isolated from patients with disseminated infections,” Journal of Clinical Microbiology, vol. 33, no. 11, pp. 2805–2811, 1995. View at Google Scholar · View at Scopus
  34. M. Pechere, M. Opravil, A. Wald et al., “Clinical and epidemiologic features of infection with Mycobacterium genavense. Swiss HIV Cohort Study,” Archives of Internal Medicine, vol. 155, no. 4, pp. 400–404, 1995. View at Publisher · View at Google Scholar · View at Scopus
  35. V. Levy-Frebault, B. Pangon, A. Bure, C. Katlama, C. Marche, and H. L. David, “Mycobacterium simiae and Mycobacterium avium-M. intracellulare mixed infection in acquired immune deficiency syndrome,” Journal of Clinical Microbiology, vol. 25, no. 1, pp. 154–157, 1987. View at Google Scholar · View at Scopus
  36. N. S. Chandra, M. F. Torres, K. L. Winthrop et al., “Cluster of Mycobacterium chelonae keratitis cases following laser in-situ keratomileusis,” American Journal of Ophthalmology, vol. 132, no. 6, pp. 819–830, 2001. View at Publisher · View at Google Scholar · View at Scopus
  37. H. W. Clegg, M. T. Foster, W. E. Sanders Jr., and W. B. Baine, “Infection due to organisms of the Mycobacterium fortuitum complex after augmentation mammaplasty: clinical and epidemiologic features,” The Journal of Infectious Diseases, vol. 147, no. 3, pp. 427–433, 1983. View at Publisher · View at Google Scholar · View at Scopus
  38. J. F. Hoy, K. V. I. Rolston, R. L. Hopfer, and G. P. Bodey, “Mycobacterium fortuitum bacteremia in patients with cancer and long-term venous catheters,” The American Journal of Medicine, vol. 83, no. 2, pp. 213–217, 1987. View at Publisher · View at Google Scholar · View at Scopus
  39. T. J. Safranek, W. R. Jarvis, L. A. Carson et al., “Mycobacterium chelonae wound infections after plastic surgery employing contaminated gentian violet skin-marking solution,” The New England Journal of Medicine, vol. 317, no. 4, pp. 197–201, 1987. View at Publisher · View at Google Scholar · View at Scopus
  40. R. J. Wallace Jr., J. M. Musser, S. I. Hull et al., “Diversity and sources of rapidly growing mycobacteria associated with infections following cardiac surgery,” The Journal of Infectious Diseases, vol. 159, no. 4, pp. 708–716, 1989. View at Publisher · View at Google Scholar · View at Scopus
  41. J. N. Kuritsky, M. G. Bullen, C. V. Broome, V. A. Silcox, R. C. Good, and R. J. Wallace Jr., “Sternal wound infections and endocarditis due to organisms of the Mycobacterium fortuitum complex,” Annals of Internal Medicine, vol. 98, no. 6, pp. 938–939, 1983. View at Publisher · View at Google Scholar · View at Scopus
  42. B. A. Brown, B. Springer, V. A. Steingrube et al., “Mycobacterium wolinskyi sp. nov. and Mycobacterium goodii sp. nov., two new rapidly growing species related to Mycobacterium smegmatis and associated with human wound infections: a cooperative study from the International Working Group on Mycobacterial Taxonomy,” International Journal of Systematic Bacteriology, vol. 49, no. 4, pp. 1493–1511, 1999. View at Publisher · View at Google Scholar · View at Scopus
  43. A. M. Cardoso, E. Martins de Sousa, C. Viana-Niero et al., “Emergence of nosocomial Mycobacterium massiliense infection in Goiás, Brazil,” Microbes and Infection, vol. 10, no. 14-15, pp. 1552–1557, 2008. View at Publisher · View at Google Scholar · View at Scopus
  44. R. S. Duarte, M. C. S. Lourenço, L. D. S. Fonseca et al., “Epidemic of postsurgical infections caused by Mycobacterium massiliense,” Journal of Clinical Microbiology, vol. 47, no. 7, pp. 2149–2155, 2009. View at Publisher · View at Google Scholar · View at Scopus
  45. C. Viana-Niero, K. V. B. Lima, M. L. Lopes et al., “Molecular characterization of Mycobacterium massiliense and Mycobacterium bolletii in isolates collected from outbreaks of infections after laparoscopic surgeries and cosmetic procedures,” Journal of Clinical Microbiology, vol. 46, no. 3, pp. 850–855, 2008. View at Publisher · View at Google Scholar · View at Scopus
  46. W. Beckett, M. Kallay, A. Sood, Z. Zuo, and D. Milton, “Hypersensitivity pneumonitis associated with environmental mycobacteria,” Environmental Health Perspectives, vol. 113, no. 6, pp. 767–770, 2005. View at Publisher · View at Google Scholar · View at Scopus
  47. E. Tortoli, “Impact of genotypic studies on mycobacterial taxonomy: the new mycobacteria of the 1990s,” Clinical Microbiology Reviews, vol. 16, no. 2, pp. 319–354, 2003. View at Publisher · View at Google Scholar · View at Scopus
  48. T. Adékambi and M. Drancourt, “Mycobacterium bolletii respiratory infections,” Emerging Infectious Diseases, vol. 15, no. 2, pp. 302–305, 2009. View at Publisher · View at Google Scholar · View at Scopus
  49. S. C. Leao, E. Tortoli, J. Paul Euzé, and M. J. Garcia, “Proposal that Mycobacterium massiliense and Mycobacterium bolletii be united and reclassified as Mycobacterium abscessus subsp. bolletii comb. nov., designation of Mycobacterium abscessus subsp. abscessus subsp. nov. and emended description of Mycobacterium abscessus,” International Journal of Systematic and Evolutionary Microbiology, vol. 61, no. 9, pp. 2311–2313, 2011. View at Publisher · View at Google Scholar · View at Scopus
  50. F. Cabria, M.-V. Torres, J.-I. García-Cía, M.-N. Dominguez-Garrido, J. Esteban, and M. S. Jimenez, “Cervical lymphadenitis caused by Mycobacterium lentiflavum,” The Pediatric Infectious Disease Journal, vol. 21, no. 6, pp. 574–575, 2002. View at Publisher · View at Google Scholar · View at Scopus
  51. R. Hazra, C. D. Robson, A. R. Perez-Atayde, and R. N. Husson, “Lymphadenitis due to nontuberculous mycobacteria in children: presentation and response to therapy,” Clinical Infectious Diseases, vol. 28, no. 1, pp. 123–129, 1999. View at Publisher · View at Google Scholar · View at Scopus
  52. K. J. Tomecki, “Mycobacterial lymphadenitis in children: a prospective study of 105 nontuberculous cases with long-term follow-up,” Journal of the American Academy of Dermatology, vol. 35, no. 1, pp. 103–104, 1996. View at Publisher · View at Google Scholar
  53. Y. Haimi Cohen, J. Amir, S. Ashkenazi et al., “Mycobacterium haemophilum and lymphadenitis in immunocompetent children, Israel,” Emerging Infectious Diseases, vol. 14, no. 9, pp. 1437–1439, 2008. View at Publisher · View at Google Scholar · View at Scopus
  54. J. A. Lindeboom, J. M. Prins, E. S. Bruijnesteijn van Coppenraet, R. Lindeboom, and E. J. Kuijper, “Cervicofacial lymphadenitis in children caused by Mycobacterium haemophilum,” Clinical Infectious Diseases, vol. 41, no. 11, pp. 1569–1575, 2005. View at Publisher · View at Google Scholar · View at Scopus
  55. M. Zaugg, M. Salfinger, M. Opravil, and R. Lüthy, “Extrapulmonary and disseminated infections due to Mycobacterium malmoense: case report and review,” Clinical Infectious Diseases, vol. 16, no. 4, pp. 540–549, 1993. View at Publisher · View at Google Scholar · View at Scopus
  56. B. Henriques, S. E. Hoffner, B. Petrini, I. Juhlin, P. Wåhlén, and G. Källenius, “Infection with Mycobacterium malmoense in Sweden: report of 221 cases,” Clinical Infectious Diseases, vol. 18, no. 4, pp. 596–600, 1994. View at Publisher · View at Google Scholar · View at Scopus
  57. J. Huber, E. Richter, L. Binder, M. Maaß, R. Eberl, and W. Zenz, “Mycobacterium bohemicum and cervical lymphadenitis in children,” Emerging Infectious Diseases, vol. 14, no. 7, pp. 1158–1159, 2008. View at Publisher · View at Google Scholar · View at Scopus
  58. C. Piersimoni, G. Goteri, D. Nista, A. Mariottini, G. Mazzarelli, and S. Bornigia, “Mycobacterium lentiflavum as an emerging causative agent of cervical lymphadenitis,” Journal of Clinical Microbiology, vol. 42, no. 8, pp. 3894–3897, 2004. View at Publisher · View at Google Scholar · View at Scopus
  59. D. S. Walsh, E. C. Dela Cruz, R. M. Abalos et al., “Clinical and histologic features of skin lesions in a cynomolgus monkey experimentally infected with Mycobacterium ulcerans (Buruli ulcer) by intradermal inoculation,” The American Journal of Tropical Medicine and Hygiene, vol. 76, no. 1, pp. 132–134, 2007. View at Google Scholar · View at Scopus
  60. D. S. Walsh, F. Portaels, and W. M. Meyers, “Buruli ulcer (Mycobacterium ulcerans infection),” Transactions of the Royal Society of Tropical Medicine and Hygiene, vol. 102, no. 10, pp. 969–978, 2008. View at Publisher · View at Google Scholar · View at Scopus
  61. B. Branger, A. Gouby, R. Oulès et al., “Mycobacterium haemophilum and Mycobacterium xenopi associated infection in a renal transplant patient,” Clinical Nephrology, vol. 23, no. 1, pp. 46–49, 1985. View at Google Scholar · View at Scopus
  62. A. Carbonne, F. Brossier, I. Arnaud et al., “Outbreak of nontuberculous mycobacterial subcutaneous infections related to multiple mesotherapy injections,” Journal of Clinical Microbiology, vol. 47, no. 6, pp. 1961–1964, 2009. View at Publisher · View at Google Scholar · View at Scopus
  63. R. C. Cooksey, J. H. de Waard, M. A. Yakrus et al., “Mycobacterium cosmeticum sp. nov., a novel rapidly growing species isolated from a cosmetic infection and from a nail salon,” International Journal of Systematic and Evolutionary Microbiology, vol. 54, no. 6, pp. 2385–2391, 2004. View at Publisher · View at Google Scholar · View at Scopus
  64. N. E. Correa, J. C. Cataño, G. I. Mejía et al., “Outbreak of mesotherapy-associated cutaneous infections caused by Mycobacterium chelonae in Colombia,” Japanese Journal of Infectious Diseases, vol. 63, no. 2, pp. 143–145, 2010. View at Google Scholar · View at Scopus
  65. H.-Y. Kim, Y.-J. Yun, G. P. Chan et al., “Outbreak of Mycobacterium massiliense infection associated with intramuscular injections,” Journal of Clinical Microbiology, vol. 45, no. 9, pp. 3127–3130, 2007. View at Publisher · View at Google Scholar · View at Scopus
  66. C. V. Munayco, C. G. Grijalva, D. R. Culqui et al., “Outbreak of persistent cutaneous abscesses due to Mycobacterium chelonae after mesotherapy sessions, Lima, Peru,” Revista de Saude Publica, vol. 42, no. 1, pp. 146–149, 2008. View at Publisher · View at Google Scholar · View at Scopus
  67. I. A. Rivera-Olivero, A. Guevara, A. Escalona et al., “Soft tissue infections due to non-tuberculous mycobacteria following mesotherapy. What is the price of beauty?” Enfermedades Infecciosas y Microbiologia Clinica, vol. 24, no. 5, pp. 302–306, 2006. View at Publisher · View at Google Scholar · View at Scopus
  68. Y. Zhibang, Z. BiXia, L. Qishan, C. Lihao, L. Xiangquan, and L. Huaping, “Large-scale outbreak of infection with Mycobacterium chelonae subsp. abscessus after Penicillin injection,” Journal of Clinical Microbiology, vol. 40, no. 7, pp. 2626–2628, 2002. View at Publisher · View at Google Scholar · View at Scopus
  69. B. R. Toy and P. J. Frank, “Outbreak of Mycobacterium abscessus infection after soft tissue augmentation,” Dermatologic Surgery, vol. 29, no. 9, pp. 971–973, 2003. View at Publisher · View at Google Scholar · View at Scopus
  70. L. M. Feazel, L. K. Baumgartner, K. L. Peterson, D. N. Frank, J. K. Harris, and N. R. Pace, “Opportunistic pathogens enriched in showerhead biofilms,” Proceedings of the National Academy of Sciences of the United States of America, vol. 106, no. 38, pp. 16393–16398, 2009. View at Publisher · View at Google Scholar · View at Scopus
  71. A. Somoskovi and M. Salfinger, “Nontuberculous mycobacteria in respiratory infections: advances in diagnosis and identification,” Clinics in Laboratory Medicine, vol. 34, no. 2, pp. 271–295, 2014. View at Publisher · View at Google Scholar · View at Scopus
  72. S. Bosio, S. Leekha, S. I. Gamb, A. J. Wright, C. L. Terrell, and D. V. Miller, “Mycobacterium fortuitum prosthetic valve endocarditis: a case for the pathogenetic role of biofilms,” Cardiovascular Pathology, vol. 21, no. 4, pp. 361–364, 2012. View at Publisher · View at Google Scholar · View at Scopus
  73. E. Rüegg, A. Cheretakis, A. Modarressi, S. Harbarth, and B. Pittet-Cuénod, “Multisite Infection with Mycobacterium abscessus after replacement of breast implants and gluteal lipofilling,” Case Reports in Infectious Diseases, vol. 2015, Article ID 361340, 6 pages, 2015. View at Publisher · View at Google Scholar
  74. T. Qvist, S. R. Eickhardt-Sørensen, T. L. Katzenstein et al., “WS1.5 First evidence of Mycobacterium abscessus biofilm in the lungs of chronically infected CF patients,” Journal of Cystic Fibrosis, vol. 12, article S2, 2013. View at Publisher · View at Google Scholar
  75. C. Le Dantec, J.-P. Duguet, A. Montiel, N. Dumoutier, S. Dubrou, and V. Vincent, “Occurrence of mycobacteria in water treatment lines and in water distribution systems,” Applied and Environmental Microbiology, vol. 68, no. 11, pp. 5318–5325, 2002. View at Publisher · View at Google Scholar · View at Scopus
  76. J. O. Falkinham, “Epidemiology of infection by nontuberculous mycobacteria,” Clinical Microbiology Reviews, vol. 9, no. 2, pp. 177–215, 1996. View at Google Scholar · View at Scopus
  77. J. O. Falkinham, “The changing pattern of nontuberculous mycobacterial disease,” The Canadian Journal of Infectious Diseases, vol. 14, no. 5, pp. 281–286, 2003. View at Google Scholar · View at Scopus
  78. D. H. Spach, F. E. Silverstein, and W. E. Stamm, “Transmission of infection by gastrointestinal endoscopy and bronchoscopy,” Annals of Internal Medicine, vol. 118, no. 2, pp. 117–128, 1993. View at Publisher · View at Google Scholar · View at Scopus
  79. R. J. Wallace Jr., B. A. Brown, and D. E. Griffith, “Nosocomial outbreaks/pseudo-outbreaks caused by nontuberculous mycobacteria,” Annual Review of Microbiology, vol. 52, pp. 453–490, 1998. View at Publisher · View at Google Scholar · View at Scopus
  80. P. C. Bogino, M. D. L. M. Oliva, F. G. Sorroche, and W. Giordano, “The role of bacterial biofilms and surface components in plant-bacterial associations,” International Journal of Molecular Sciences, vol. 14, no. 8, pp. 15838–15859, 2013. View at Publisher · View at Google Scholar · View at Scopus
  81. V. L. Marlow, M. Porter, L. Hobley et al., “Phosphorylated DegU manipulates cell fate differentiation in the Bacillus subtilis biofilm,” Journal of Bacteriology, vol. 196, no. 1, pp. 16–27, 2014. View at Publisher · View at Google Scholar · View at Scopus
  82. H. Koo, M. L. Falsetta, and M. I. Klein, “The exopolysaccharide matrix: a virulence determinant of cariogenic biofilm,” Journal of Dental Research, vol. 92, no. 12, pp. 1065–1073, 2013. View at Publisher · View at Google Scholar · View at Scopus
  83. I. M. Sharma, A. Petchiappan, and D. Chatterji, “Quorum sensing and biofilm formation in mycobacteria: role of c-di-GMP and methods to study this second messenger,” IUBMB Life, vol. 66, no. 12, pp. 823–834, 2015. View at Publisher · View at Google Scholar · View at Scopus
  84. J. O. Falkinham, “Nontuberculous mycobacteria from household plumbing of patients with nontuberculous mycobacteria disease,” Emerging Infectious Diseases, vol. 17, no. 3, pp. 419–424, 2011. View at Publisher · View at Google Scholar · View at Scopus
  85. P. W. J. J. van der Wielen and D. van der Kooij, “Nontuberculous mycobacteria, fungi, and opportunistic pathogens in unchlorinated drinking water in the Netherlands,” Applied and Environmental Microbiology, vol. 79, no. 3, pp. 825–834, 2013. View at Publisher · View at Google Scholar · View at Scopus
  86. R. M. Thomson, R. Carter, C. Tolson, C. Coulter, F. Huygens, and M. Hargreaves, “Factors associated with the isolation of Nontuberculous mycobacteria (NTM) from a large municipal water system in Brisbane, Australia,” BMC Microbiology, vol. 13, artic 89, 2013. View at Publisher · View at Google Scholar · View at Scopus
  87. M. Kostakioti, M. Hadjifrangiskou, and S. J. Hultgren, “Bacterial biofilms: development, dispersal, and therapeutic strategies in the dawn of the postantibiotic era,” Cold Spring Harbor Perspectives in Medicine, vol. 3, no. 4, Article ID a010306, 2013. View at Publisher · View at Google Scholar · View at Scopus
  88. R. L. Campagnaro, H. Teichtahl, and B. Dwyer, “A pseudoepidemic of Mycobacterium chelonae: contamination of a bronchoscope and autocleaner,” Australian and New Zealand Journal of Medicine, vol. 24, no. 6, pp. 693–695, 1994. View at Publisher · View at Google Scholar · View at Scopus
  89. C. M. Nolan, P. A. Hashisaki, and D. F. Dundas, “An outbreak of soft-tissue infections due to Mycobacterium fortuitum associated with electromyography,” The Journal of Infectious Diseases, vol. 163, no. 5, pp. 1150–1153, 1991. View at Publisher · View at Google Scholar · View at Scopus
  90. C. F. von Reyn, J. N. Maslow, T. W. Barber, J. O. Falkinham, and R. D. Arbeit, “Persistent colonisation of potable water as a source of Mycobacterium avium infection in AIDS,” The Lancet, vol. 343, no. 8906, pp. 1137–1141, 1994. View at Publisher · View at Google Scholar · View at Scopus
  91. M. M. Williams, M. A. Yakrus, M. J. Arduino et al., “Structural analysis of biofilm formation by rapidly and slowly growing nontuberculous mycobacteria,” Applied and Environmental Microbiology, vol. 75, no. 7, pp. 2091–2098, 2009. View at Publisher · View at Google Scholar · View at Scopus
  92. A. Beumer, D. King, M. Donohue, J. Mistry, T. Covert, and S. Pfaller, “Detection of Mycobacterium avium subsp. paratuberculosis in drinking water and biofilms by quantitative PCR,” Applied and Environmental Microbiology, vol. 76, no. 21, pp. 7367–7370, 2010. View at Publisher · View at Google Scholar · View at Scopus
  93. M. Simões, “Antimicrobial strategies effective against infectious bacterial biofilms,” Current Medicinal Chemistry, vol. 18, no. 14, pp. 2129–2145, 2011. View at Publisher · View at Google Scholar · View at Scopus
  94. R. J. Wallace Jr., E. Iakhiaeva, M. D. Williams et al., “Absence of Mycobacterium intracellulare and presence of Mycobacterium chimaera in household water and biofilm samples of patients in the United States with Mycobacterium avium complex respiratory disease,” Journal of Clinical Microbiology, vol. 51, no. 6, pp. 1747–1752, 2013. View at Publisher · View at Google Scholar · View at Scopus
  95. M. A. De Groote and G. Huitt, “Infections due to rapidly growing mycobacteria,” Clinical Infectious Diseases, vol. 42, no. 12, pp. 1756–1763, 2006. View at Publisher · View at Google Scholar · View at Scopus
  96. A. Casadevall and L.-A. Pirofski, “Virulence factors and their mechanisms of action: the view from a damage-response framework,” Journal of Water and Health, vol. 7, supplement 1, pp. S2–S18, 2009. View at Publisher · View at Google Scholar · View at Scopus
  97. S. Gopal, P. P. Halebeedu, and G. S. V. Kumar, “Revamping the role of biofilm regulating operons in device-associated Staphylococci and Pseudomonas aeruginosa,” Indian Journal of Medical Microbiology, vol. 32, no. 2, pp. 112–123, 2014. View at Publisher · View at Google Scholar · View at Scopus
  98. D. I. Kisiela, S. Chattopadhyay, S. J. Libby et al., “Evolution of Salmonella enterica Virulence via point mutations in the fimbrial adhesin,” PLoS Pathogens, vol. 8, no. 6, Article ID e1002733, 2012. View at Publisher · View at Google Scholar · View at Scopus
  99. N. Høiby, T. Bjarnsholt, M. Givskov, S. Molin, and O. Ciofu, “Antibiotic resistance of bacterial biofilms,” International Journal of Antimicrobial Agents, vol. 35, no. 4, pp. 322–332, 2010. View at Publisher · View at Google Scholar · View at Scopus
  100. A. Ito, A. Taniuchi, T. May, K. Kawata, and S. Okabe, “Increased antibiotic resistance of Escherichia coli in mature biofilms,” Applied and Environmental Microbiology, vol. 75, no. 12, pp. 4093–4100, 2009. View at Publisher · View at Google Scholar · View at Scopus
  101. M. Wozniak, J. Tiuryn, and L. Wong, “An approach to identifying drug resistance associated mutations in bacterial strains,” BMC Genomics, vol. 13, supplement 7, article S23, 2012. View at Publisher · View at Google Scholar · View at Scopus
  102. A. K. Ojha, A. D. Baughn, D. Sambandan et al., “Growth of Mycobacterium tuberculosis biofilms containing free mycolic acids and harbouring drug-tolerant bacteria,” Molecular Microbiology, vol. 69, no. 1, pp. 164–174, 2008. View at Publisher · View at Google Scholar · View at Scopus
  103. S. Helaine and E. Kugelberg, “Bacterial persisters: formation, eradication, and experimental systems,” Trends in Microbiology, vol. 22, no. 7, pp. 417–424, 2014. View at Publisher · View at Google Scholar · View at Scopus
  104. Q. Wei and L. Z. Ma, “Biofilm matrix and its regulation in Pseudomonas aeruginosa,” International Journal of Molecular Sciences, vol. 14, no. 10, pp. 20983–21005, 2013. View at Publisher · View at Google Scholar · View at Scopus
  105. S. J. Rose, L. M. Babrak, and L. E. Bermudez, “Mycobacterium avium possesses extracellular DNA that contributes to biofilm formation, structural integrity, and tolerance to antibiotics,” PLoS ONE, vol. 10, no. 5, Article ID e0128772, 2015. View at Publisher · View at Google Scholar
  106. Y. Yamazaki, L. Danelishvili, M. Wu, M. MacNab, and L. E. Bermudez, “Mycobacterium avium genes associated with the ability to form a biofilm,” Applied and Environmental Microbiology, vol. 72, no. 1, pp. 819–825, 2006. View at Publisher · View at Google Scholar · View at Scopus
  107. A. K. Ojha, X. Trivelli, Y. Guerardel, L. Kremer, and G. F. Hatfull, “Enzymatic hydrolysis of trehalose dimycolate releases free mycolic acids during mycobacterial growth in biofilms,” The Journal of Biological Chemistry, vol. 285, no. 23, pp. 17380–17389, 2010. View at Publisher · View at Google Scholar · View at Scopus
  108. A. Ojha, M. Anand, A. Bhatt, L. Kremer, W. R. Jacobs Jr., and G. F. Hatfull, “GroEL1: a dedicated chaperone involved in mycolic acid biosynthesis during biofilm formation in mycobacteria,” Cell, vol. 123, no. 5, pp. 861–873, 2005. View at Publisher · View at Google Scholar · View at Scopus
  109. R. Gopalaswamy, S. Narayanan, W. R. Jacobs Jr., and Y. Av-Gay, “Mycobacterium smegmatis biofilm formation and sliding motility are affected by the serine/threonine protein kinase PknF,” FEMS Microbiology Letters, vol. 278, no. 1, pp. 121–127, 2008. View at Publisher · View at Google Scholar · View at Scopus
  110. A. Ojha and G. F. Hatfull, “The role of iron in Mycobacterium smegmatis biofilm formation: the exochelin siderophore is essential in limiting iron conditions for biofilm formation but not for planktonic growth,” Molecular Microbiology, vol. 66, no. 2, pp. 468–483, 2007. View at Publisher · View at Google Scholar · View at Scopus
  111. T. Shi, T. Fu, and J. Xie, “Polyphosphate deficiency affects the sliding motility and biofilm formation of Mycobacterium smegmatis,” Current Microbiology, vol. 63, no. 5, pp. 470–476, 2011. View at Publisher · View at Google Scholar · View at Scopus
  112. T. B. Johansen, A. Agdestein, I. Olsen, S. F. Nilsen, G. Holstad, and B. Djønne, “Biofilm formation by Mycobacterium avium isolates originating from humans, swine and birds,” BMC Microbiology, vol. 9, article 159, 2009. View at Publisher · View at Google Scholar · View at Scopus
  113. M. Daffé, “The cell envelope of tubercle bacilli,” Tuberculosis, vol. 95, pp. S155–S158, 2015. View at Publisher · View at Google Scholar
  114. S. Ramsugit, S. Guma, B. Pillay et al., “Pili contribute to biofilm formation in vitro in Mycobacterium tuberculosis,” Antonie van Leeuwenhoek, vol. 104, no. 5, pp. 725–735, 2013. View at Publisher · View at Google Scholar
  115. O. Abbas, N. Marrouch, M. M. Kattar et al., “Cutaneous non-tuberculous Mycobacterial infections: a clinical and histopathological study of 17 cases from Lebanon,” Journal of the European Academy of Dermatology and Venereology, vol. 25, no. 1, pp. 33–42, 2011. View at Publisher · View at Google Scholar · View at Scopus
  116. J. Recht and R. Kolter, “Glycopeptidolipid acetylation affects sliding motility and biofilm formation in Mycobacterium smegmatis,” Journal of Bacteriology, vol. 183, no. 19, pp. 5718–5724, 2001. View at Publisher · View at Google Scholar · View at Scopus
  117. S. Sousa, M. Bandeira, P. A. Carvalho, A. Duarte, and L. Jordao, “Nontuberculous mycobacteria pathogenesis and biofilm assembly,” International Journal of Mycobacteriology, vol. 4, no. 1, pp. 36–43, 2015. View at Publisher · View at Google Scholar · View at Scopus
  118. N. Barraud, J. A. Moscoso, J.-M. Ghigo, and A. Filloux, “Methods for studying biofilm dispersal in Pseudomonas aeruginosa,” in Pseudomonas Methods and Protocols, vol. 1149 of Methods in Molecular Biology, pp. 643–651, Springer, New York, NY, USA, 2014. View at Publisher · View at Google Scholar
  119. B. M. Coffey and G. G. Anderson, “Biofilm formation in the 96-well microtiter plate,” in Pseudomonas Methods and Protocols, vol. 1149 of Methods in Molecular Biology, pp. 631–641, Springer, New York, NY, USA, 2014. View at Publisher · View at Google Scholar
  120. F. Pantanella, P. Valenti, T. Natalizi, D. Passeri, and F. Berlutti, “Analytical techniques to study microbial biofilm on abiotic surfaces: pros and cons of the main techniques currently in use,” Annali di Igiene, vol. 25, no. 1, pp. 31–42, 2013. View at Google Scholar · View at Scopus
  121. L. Crémet, S. Corvec, E. Batard et al., “Comparison of three methods to study biofilm formation by clinical strains of Escherichia coli,” Diagnostic Microbiology and Infectious Disease, vol. 75, no. 3, pp. 252–255, 2013. View at Publisher · View at Google Scholar · View at Scopus
  122. P. Chavant, B. Gaillard-Martinie, R. Talon, M. Hébraud, and T. Bernardi, “A new device for rapid evaluation of biofilm formation potential by bacteria,” Journal of Microbiological Methods, vol. 68, no. 3, pp. 605–612, 2007. View at Publisher · View at Google Scholar · View at Scopus
  123. R. A. Nasr, H. M. AbuShady, and H. S. Hussein, “Biofilm formation and presence of icaAD gene in clinical isolates of staphylococci,” Egyptian Journal of Medical Human Genetics, vol. 13, no. 3, pp. 269–274, 2012. View at Publisher · View at Google Scholar · View at Scopus
  124. P. D. C. Melo, L. Menezes Ferreira, A. Nader Filho, L. Francisco Zafalon, H. I. Godoy Vicente, and V. de Souza, “Comparison of methods for the detection of biofilm formation by Staphylococcus aureus isolated from bovine subclinical mastitis,” Brazilian Journal of Microbiology, vol. 44, no. 1, pp. 119–124, 2013. View at Publisher · View at Google Scholar · View at Scopus
  125. D. Balestrino, B. Souweine, N. Charbonnel et al., “Eradication of microorganisms embedded in biofilm by an ethanol-based catheter lock solution,” Nephrology Dialysis Transplantation, vol. 24, no. 10, pp. 3204–3209, 2009. View at Publisher · View at Google Scholar · View at Scopus
  126. I. E. Ivanov, C. D. Boyd, P. D. Newell et al., “Atomic force and super-resolution microscopy support a role for LapA as a cell-surface biofilm adhesin of Pseudomonas fluorescens,” Research in Microbiology, vol. 163, no. 9-10, pp. 685–691, 2012. View at Publisher · View at Google Scholar · View at Scopus
  127. A. Dötsch, D. Eckweiler, M. Schniederjans et al., “The Pseudomonas aeruginosa transcriptome in planktonic cultures and static biofilms using rna sequencing,” PLoS ONE, vol. 7, no. 2, Article ID e31092, 2012. View at Publisher · View at Google Scholar · View at Scopus
  128. L. Muszkieta, A. Beauvais, V. Pähtz et al., “Investigation of Aspergillus fumigatus biofilm formation by various ‘omics’ approaches,” Frontiers in Microbiology, vol. 4, article 13, 2013. View at Publisher · View at Google Scholar · View at Scopus
  129. S. Rumbo-Feal, M. J. Gómez, C. Gayoso et al., “Whole transcriptome analysis of Acinetobacter baumannii assessed by RNA-sequencing reveals different mRNA expression profiles in biofilm compared to planktonic cells,” PLoS ONE, vol. 8, no. 8, Article ID e72968, 2013. View at Publisher · View at Google Scholar · View at Scopus
  130. S. Chatterjee, N. Biswas, A. Datta, R. Dey, and P. Maiti, “Atomic force microscopy in biofilm study,” Microscopy, vol. 63, no. 4, pp. 269–278, 2014. View at Publisher · View at Google Scholar
  131. F. Germano, E. Bramanti, C. Arcuri, F. Cecchetti, and M. Cicciù, “Atomic force microscopy of bacteria from periodontal subgingival biofilm: preliminary study results,” European Journal of Dentistry, vol. 7, no. 2, pp. 152–158, 2013. View at Publisher · View at Google Scholar · View at Scopus
  132. C. J. Wright, M. K. Shah, L. C. Powell, and I. Armstrong, “Application of AFM from microbial cell to biofilm,” Scanning, vol. 32, no. 3, pp. 134–149, 2010. View at Publisher · View at Google Scholar · View at Scopus
  133. L. Jordao, C. K. E. Bleck, L. Mayorga, G. Griffiths, and E. Anes, “On the killing of mycobacteria by macrophages,” Cellular Microbiology, vol. 10, no. 2, pp. 529–548, 2008. View at Publisher · View at Google Scholar · View at Scopus
  134. C. Silva, J. Perdigao, E. Alverca et al., “Exploring the contribution of mycobacteria characteristics in their interaction with human macrophages,” Microscopy and Microanalysis, vol. 19, no. 5, pp. 1159–1169, 2013. View at Publisher · View at Google Scholar · View at Scopus
  135. J. H. Park, J.-K. Lee, H.-S. Um, B.-S. Chang, and S.-Y. Lee, “A periodontitis-associated multispecies model of an oral biofilm,” Journal of Periodontal & Implant Science, vol. 44, no. 2, pp. 79–84, 2014. View at Publisher · View at Google Scholar · View at Scopus
  136. H. Jing, B. Mezgebe, A. Aly Hassan, E. Sahle-Demessie, G. A. Sorial, and C. Bennett-Stamper, “Experimental and modeling studies of sorption of ceria nanoparticle on microbial biofilms,” Bioresource Technology, vol. 161, pp. 109–117, 2014. View at Publisher · View at Google Scholar · View at Scopus
  137. S. Daddi Oubekka, R. Briandet, M.-P. Fontaine-Aupart, and K. Steenkeste, “Correlative time-resolved fluorescence microscopy to assess antibiotic diffusion-reaction in biofilms,” Antimicrobial Agents and Chemotherapy, vol. 56, no. 6, pp. 3349–3358, 2012. View at Publisher · View at Google Scholar · View at Scopus
  138. M. Alhede, K. Qvortrup, R. Liebrechts, N. Høiby, M. Givskov, and T. Bjarnsholt, “Combination of microscopic techniques reveals a comprehensive visual impression of biofilm structure and composition,” FEMS Immunology and Medical Microbiology, vol. 65, no. 2, pp. 335–342, 2012. View at Publisher · View at Google Scholar · View at Scopus
  139. H. Ceri, M. E. Olson, C. Stremick, R. R. Read, D. Morck, and A. Buret, “The Calgary Biofilm Device: new technology for rapid determination of antibiotic susceptibilities of bacterial biofilms,” Journal of Clinical Microbiology, vol. 37, no. 6, pp. 1771–1776, 1999. View at Google Scholar · View at Scopus