Mixed Modeling with Whole Genome Data

Table 2

Q1 and VEGFC under a linear model.

Model/parameter	Estimate	SE	𝑧/𝑡^†	−2 Res log likelihood	AIC
Kinship				1789.5	1793.5
𝜎^2𝑃	0.5488	0.08262	6.64
SEX	−0.2379	0.04614	−5.16
AGE	0.01014	0.001345	7.54
SMOKE	0.36894	0.07280	5.07
Kinship + IBD				1775.2	1781.2
𝜎^2𝑃	0.4157	0.08713	4.77
𝜎^2𝑀	0.1076	0.03846	2.80
SEX	−0.2488	0.04542	−5.48
AGE	0.01044	0.001334	7.82
SMOKE	0.3821	0.07181	5.32

^†𝑧 is for variance components while 𝑡 for fixed effects.