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Spectroscopy
Volume 17, Issue 4, Pages 653-661
http://dx.doi.org/10.1155/2003/379137

Calibration and Standardisation of Synchrotron Radiation Circular Dichroism and Conventional Circular Dichroism Spectrophotometers

Andrew J. Miles,1 Frank Wien,1 Jonathan G. Lees,1 A. Rodger,2 Robert W. Janes,3 and B. A. Wallace1

1Department of Crystallography, Birkbeck College, University of London, London WC1E 7HX, UK
2Department of Chemistry, Warwick University, Coventry CV4 7AL, UK
3School of Biological Sciences, Queen Mary, University of London, London E1 4NS, UK

Copyright © 2003 Hindawi Publishing Corporation. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Citations to this Article [68 citations]

The following is the list of published articles that have cited the current article.

  • J.G. Lees, B.R. Smith, F. Wien, A.J. Miles, and B.A. Wallace, “CDtool—an integrated software package for circular dichroism spectroscopic data processing, analysis, and archiving,” Analytical Biochemistry, vol. 332, no. 2, pp. 285–289, 2004. View at Publisher · View at Google Scholar
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  • P. Evans, K. Wyatt, G.J. Wistow, O.A. Bateman, B.A. Wallace, and C. Slingsby, “The P23T Cataract Mutation Causes Loss of Solubility of Folded γD-Crystallin,” Journal of Molecular Biology, vol. 343, no. 2, pp. 435–444, 2004. View at Publisher · View at Google Scholar
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  • Wien, Miles, Lees, Vrønning Hoffmann, and Wallace, “VUV irradiation effects on proteins in high-flux synchrotron radiation circular dichroism spectroscopy,” Journal of Synchrotron Radiation, vol. 12, no. 4, pp. 517–523, 2005. View at Publisher · View at Google Scholar
  • James T. Macdonald, Andrew G. Purkiss, Myron A. Smith, Paul Evans, Julia M. Goodfellow, and Christine Slingsby, “Unfolding crystallins: The destabilizing role of a β-hairpin cysteine in βB2-crystallin by simulation and experiment,” Protein Science, vol. 14, no. 5, pp. 1282–1292, 2005. View at Publisher · View at Google Scholar
  • Andrew J. Miles, Lee Whitmore, and Wallace, “Spectral magnitude effects on the analyses of secondary structure from circular dichroism spectroscopic data,” Protein Science, vol. 14, no. 2, pp. 368–374, 2005. View at Publisher · View at Google Scholar
  • Robert W. Janes, “Bioinformatics analyses of circular dichroism protein reference databases,” Bioinformatics, vol. 21, no. 23, pp. 4230–4238, 2005. View at Publisher · View at Google Scholar
  • Frank Wien, Wallace, Andrew J. Miles, and Jonathan G. Lees, “Calibration and standardisation of synchrotron radiation and conventional circular dichroism spectrometers. Part 2: Factors affecting magnitude and wavelength,” Spectroscopy, vol. 19, no. 1, pp. 43–51, 2005. View at Publisher · View at Google Scholar
  • Jonathan G. Lees, Andrew J. Miles, Frank Wien, and B. A. Wallace, “A reference database for circular dichroism spectroscopy covering fold and secondary structure space,” Bioinformatics, vol. 22, no. 16, pp. 1955–1962, 2006. View at Publisher · View at Google Scholar
  • Elizabeta Nemeth, Gloria C. Preza, Chun-Ling Jung, Jerry Kaplan, Alan J. Waring, and Tomas Ganz, “The N-terminus of hepcidin is essential for its interaction with ferroportin: Structure-function study,” Blood, vol. 107, no. 1, pp. 328–333, 2006. View at Publisher · View at Google Scholar
  • Andrew J. Miles, and B. A. Wallace, “Synchrotron radiation circular dichroism spectroscopy of proteins and applications in structural and functional genomics,” Chemical Society Reviews, vol. 35, no. 1, pp. 39, 2006. View at Publisher · View at Google Scholar
  • Sergio Abbate, Sergio Barlati, Marina Colombi, Sandro L. Fornili, Pierangelo Francescato, Fabrizio Gangemi, France Lebon, Giovanna Longhi, Paolo Manitto, Teresa Recca, Giovanna Speranza, and Nicoletta Zoppi, “Study of conformational properties of a biologically active peptide of fibronectin by circular dichroism, NMR and molecular dynamics simulation,” Physical Chemistry Chemical Physics, vol. 8, no. 40, pp. 4668, 2006. View at Publisher · View at Google Scholar
  • Masahito Tanaka, Kazutoshi Yagi-Watanabe, Toru Yamada, Fusae Kaneko, and Kazumichi Nakagawa, “Development of vacuum-ultraviolet circular dichroism measurement system using a polarizing undulator,” Chirality, vol. 18, no. 3, pp. 196–204, 2006. View at Publisher · View at Google Scholar
  • Giuliano Alagona, Caterina Ghio, and Susanna Monti, “A test case for time-dependent density functional theory calculations of electronic circular dichroism: 2-chloro-4-methoxy-6- [(R)-1-phenylethylamino]-1,3,5- triazine,” Theoretical Chemistry Accounts, vol. 117, no. 5-6, pp. 793–803, 2007. View at Publisher · View at Google Scholar
  • Lee Whitmore, and Wallace, “Protein secondary structure analyses from circular dichroism spectroscopy: Methods and reference databases,” Biopolymers, vol. 89, no. 5, pp. 392–400, 2008. View at Publisher · View at Google Scholar
  • Nathan P. Cowieson, Andrew J. Miles, Gautier Robin, Jade K. Forwood, Bostjan Kobe, Jennifer L. Martin, and B. A. Wallace, “Evaluating protein : protein complex formation using synchrotron radiation circular dichroism spectroscopy,” Proteins-Structure Function and Bioinformatics, vol. 70, no. 4, pp. 1142–1146, 2008. View at Publisher · View at Google Scholar
  • Andrew J. Miles, Alison Drechsler, Katarina Kristan, Gregor Anderluh, Raymond S. Norton, Wallace, and Frances Separovic, “The effects of lipids on the structure of the eukaryotic cytolysin equinatoxin II: A synchrotron radiation circular dichroism spectroscopic study,” Biochimica et Biophysica Acta - Biomembranes, vol. 1778, no. 10, pp. 2091–2096, 2008. View at Publisher · View at Google Scholar
  • Nadège Jamin, and Jean-Jacques Lacapèrepp. 241–258, 2008. View at Publisher · View at Google Scholar
  • Jonathan G. Lees, and Robert W. Janes, “Combining sequence-based prediction methods and circular dichroism and infrared spectroscopic data to improve protein secondary structure determinations,” Bmc Bioinformatics, vol. 9, 2008. View at Publisher · View at Google Scholar
  • Masahito Tanaka, Kazutoshi Yagi-Watanabe, Fusae Kaneko, and Kazumichi Nakagawa, “Accurate and quick calibration method for polarization-modulation spectroscopy using an ac-modulated polarizing undulator,” Review of Scientific Instruments, vol. 79, no. 8, 2008. View at Publisher · View at Google Scholar
  • Angeliki Damianoglou, Edward J. Crust, Matthew R. Hicks, Suzanne E. Howson, Alex E. Knight, Jascindra Ravi, Peter Scott, and Alison Rodger, “A new reference material for UV-visible circular dichroism spectroscopy,” Chirality, vol. 20, no. 9, pp. 1029–1038, 2008. View at Publisher · View at Google Scholar
  • Wallace, “Protein characterisation by synchrotron radiation circular dichroism spectroscopy,” Quarterly Reviews of Biophysics, vol. 42, no. 4, pp. 317–370, 2009. View at Publisher · View at Google Scholar
  • Alison Drechsler, Andrew J. Miles, Raymond S. Norton, Wallace, and Frances Separovic, “Effect of lipid on the conformation of the N-terminal region of equinatoxin II: A synchrotron radiation circular dichroism spectroscopic study,” European Biophysics Journal, vol. 39, no. 1, pp. 121–127, 2009. View at Publisher · View at Google Scholar
  • Jascindra Ravi, Anna E. Hills, and Alex E. Knight, “Reproducible circular dichroism measurements for biopharmaceutical applications,” Advances in Biomedical Spectroscopy, vol. 1, pp. 125–140, 2009. View at Publisher · View at Google Scholar
  • Wallace, Lee Whitmore, and Robert W. Janes, “The protein circular dichroism data bank (PCDDB): A resource for data archiving, sharing, validation and analysis,” Advances in Biomedical Spectroscopy, vol. 1, pp. 216–227, 2009. View at Publisher · View at Google Scholar
  • Andrew J. Miles, and Wallace, “Calibration techniques for circular dichroism and synchrotron radiation circular dichroism spectroscopy,” Advances in Biomedical Spectroscopy, vol. 1, pp. 73–90, 2009. View at Publisher · View at Google Scholar
  • Sharon M. Kelly, and Nicholas C. Price, “Sample preparation and good practice in circular dichroism spectroscopy,” Advances in Biomedical Spectroscopy, vol. 1, pp. 91–107, 2009. View at Publisher · View at Google Scholar
  • Ye Tao, Yan Huang, Zhenghua Gao, Hao Zhuang, Aiyu Zhou, Yinglei Tan, Daowu Li, and Shuaishuai Sun, “Developing VUV spectroscopy for protein folding and material luminescence on beamline 4B8 at the Beijing Synchrotron Radiation Facility,” Journal of Synchrotron Radiation, vol. 16, no. 6, pp. 857–863, 2009. View at Publisher · View at Google Scholar
  • Wallace, and Robert W. Janes, “Synchrotron radiation circular dichroism (SRCD) spectroscopy: An enhanced method for examining protein conformations and protein interactions,” Biochemical Society Transactions, vol. 38, no. 4, pp. 861–873, 2010. View at Publisher · View at Google Scholar
  • Jascindra Ravi, Frank Wien, Liqing Wu, Curtis W. Meuse, Alex E. Knight, Paulina D. Rakowska, Tommaso Garfagnini, Bruno Baron, Philippe Charlet, Christopher Jones, Stoyan Milev, Julie Desa Lorenz, and David Plusquellic, “International comparability in spectroscopic measurements of protein structure by circular dichroism: CCQM-P59.1,” Metrologia, vol. 47, no. 6, pp. 631–641, 2010. View at Publisher · View at Google Scholar
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  • Piotr Ruchala, Alan M. Fogelman, Robert I. Lehrer, Mohamad Navab, Chun-Ling Jung, Susan Hama-Levy, Ewa D. Micewicz, Hai Luong, Jonathan E. Reyles, Shantanu Sharma, and Alan J. Waring, “Oxpholipin 11D: An anti-inflammatory peptide that binds cholesterol and oxidized phospholipids,” PLoS ONE, vol. 5, no. 4, 2010. View at Publisher · View at Google Scholar
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  • Ettore Castiglioni, Paolo Albertini, and Sergio Abbate, “Evaluation of instrumental errors built in circular dichroism spectrometers,” Chirality, vol. 22, no. 1E, pp. E142–E148, 2010. View at Publisher · View at Google Scholar
  • Fu, Fung, Chung, Huang, and Chen, “Design of a high flux vacuum-ultraviolet beamline for circular dichroism experiments,” AIP Conference Proceedings, vol. 1234, pp. 331–334, 2010. View at Publisher · View at Google Scholar
  • B.A. Wallace, Kunihiko Gekko, Søren Vrønning Hoffmann, Yi-Hung Lin, John C. Sutherland, Ye Tao, Frank Wien, and Robert W. Janes, “Synchrotron radiation circular dichroism (SRCD) spectroscopy: An emerging method in structural biology for examining protein conformations and protein interactions,” Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, vol. 649, no. 1, pp. 177–178, 2011. View at Publisher · View at Google Scholar
  • Gerald Platzer, Wallace, Otto Glatter, Klaus Bister, Robert Konrat, Andreas Schedlbauer, Angela Chemelli, Przemyslaw Ozdowy, Nicolas Coudevylle, Renate Auer, Georg Kontaxis, Markus Hartl, and Andrew J. Miles, “The metastasis-associated extracellular matrix protein osteopontin forms transient structure in ligand interaction sites,” Biochemistry, vol. 50, no. 27, pp. 6113–6124, 2011. View at Publisher · View at Google Scholar
  • Arno Vredenborg, C. Stefan Lehmann, Daniel Irimia, Wim G. Roeterdink, and Maurice H. M. Janssen, “The reaction microscope: Imaging and pulse shaping control in photodynamics,” ChemPhysChem, vol. 12, no. 8, pp. 1459–1473, 2011. View at Publisher · View at Google Scholar
  • Ali Abdul-Gader, Andrew John Miles, and Wallace, “A reference dataset for the analyses of membrane protein secondary structures and transmembrane residuesusing circular dichroism spectroscopy,” Bioinformatics, vol. 27, no. 12, pp. 1630–1636, 2011. View at Publisher · View at Google Scholar
  • Mads Beich-Frandsen, Wallace, Dimitri I. Svergun, Robert Konrat, Udo Bläsi, Kristina Djinović-Carugo, Branislav Večerek, Petr V. Konarev, Björn Sjöblom, Karin Kloiber, Hermann Hämmerle, Lukas Rajkowitsch, Andrew J. Miles, and Georg Kontaxis, “Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq,” Nucleic Acids Research, vol. 39, no. 11, pp. 4900–4915, 2011. View at Publisher · View at Google Scholar
  • Benjamin Moore, Andrew J. Miles, Cristina Guerra-Giraldez, Peter Simpson, Momi Iwata, Wallace, Stephen J. Matthews, Deborah F. Smith, and Katherine A. Brown, “Structural basis of molecular recognition of the Leishmania Small Hydrophilic Endoplasmic Reticulum-associated Protein (SHERP) at membrane surfaces,” Journal of Biological Chemistry, vol. 286, no. 11, pp. 9246–9256, 2011. View at Publisher · View at Google Scholar
  • Andrew J. Miles, Wallace, and Mikael Esmann, “Correlation of structural and functional thermal stability of the integral membrane protein Na,K-ATPase,” Biochimica et Biophysica Acta - Biomembranes, vol. 1808, no. 10, pp. 2573–2580, 2011. View at Publisher · View at Google Scholar
  • Nikola Paul Chmel, Peter Scott, and Alison Rodger, “Considerations of noise and measurement reproducibility of circular dichroism measurements using Na[CoIII(EDDS)],” Chirality, vol. 24, no. 9, pp. 699–705, 2012. View at Publisher · View at Google Scholar
  • Robert W. Janes, A.J. Miles, B. Woollett, L. Whitmore, D. Klose, and B.A. Wallace, “Circular dichroism spectral data and metadata in the Protein Circular Dichroism Data Bank (PCDDB): A tutorial guide to accession and deposition,” Chirality, vol. 24, no. 9, pp. 751–763, 2012. View at Publisher · View at Google Scholar
  • D. P. Klose, B. A. Wallace, and R. W. Janes, “DichroMatch: a website for similarity searching of circular dichroism spectra,” Nucleic Acids Research, vol. 40, no. W1, pp. W547–W552, 2012. View at Publisher · View at Google Scholar
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  • Indira Wu, Thomas Heel, and Frances H. Arnold, “Role of Cysteine Residues in Thermal Inactivation of Fungal Cel6A Cellobiohydrolases,” Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 2013. View at Publisher · View at Google Scholar
  • Andrew J. Miles, Natalya U. Fedosova, Søren V. Hoffmann, B.A. Wallace, and Mikael Esmann, “Stabilisation of Na,K-ATPase structure by the cardiotonic steroid ouabain,” Biochemical and Biophysical Research Communications, 2013. View at Publisher · View at Google Scholar
  • B. Woollett, L. Whitmore, R. W. Janes, and B. A. Wallace, “ValiDichro: a website for validating and quality control of protein circular dichroism spectra,” Nucleic Acids Research, 2013. View at Publisher · View at Google Scholar
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  • Maurice G Cox, Jascindra Ravi, Paulina D Rakowska, and Alex E Knight, “Uncertainty in measurement of protein circular dichroism spectra,” Metrologia, vol. 51, no. 1, pp. 67–79, 2014. View at Publisher · View at Google Scholar
  • P. T. Erskine, A. Fokas, C. Muriithi, H. Rehman, L. A. Yates, A. Bowyer, I. S. Findlow, R. Hagan, J. M. Werner, A. J. Miles, B. A. Wallace, S. A. Wells, S. P. Wood, and J. B. Cooper, “X-ray, spectroscopic and normal-mode dynamics of calexcitin: structure–function studies of a neuronal calcium-signalling protein,” Acta Crystallographica Section D Biological Crystallography, vol. 71, no. 3, pp. 615–631, 2015. View at Publisher · View at Google Scholar
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