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Volume 18, Issue 2, Pages 323-330

Vibrational spectroscopy and computer modeling of proteins: solving structure of α1-acid glycoprotein

Vladimír Kopecký,1,2 Rüdiger Ettrich,3 Kateřina Hofbauerová,2 and Vladimír Baumruk1

1Institute of Physics, Charles University, Ke Karlovu 5, CZ-12116 Prague 2, Czech Republic
2Department of Biochemistry, Faculty of Science, Charles University, Albertov 2030, CZ-12840 Prague 2, Czech Republic
3Laboratory of High Performance Computing, Institute of Physical Biology USB and Institute of Landscape Ecology AS CR, Zámek 136, CZ-37333 Nové Hrady, Czech Republic

Copyright © 2004 Hindawi Publishing Corporation. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Citations to this Article [10 citations]

The following is the list of published articles that have cited the current article.

  • Roman Tuma, “Raman spectroscopy of proteins: from peptides to large assemblies,” Journal of Raman Spectroscopy, vol. 36, no. 4, pp. 307–319, 2005. View at Publisher · View at Google Scholar
  • Jaroslava Ristvejová, Vladimír Kopecký Jr., Žofie Sovová, Mónica Balsera, Juan B. Arellano, Michael Green, and Rüdiger Ettrich, “Structure and dynamics of the N-terminal loop of PsbQ from photosystem II of Spinacia oleracea,” Biochemical and Biophysical Research Communications, vol. 345, no. 1, pp. 287–291, 2006. View at Publisher · View at Google Scholar
  • Josef Štěpánek, Vladimír Kopecký, Alberto Mezzetti, Pierre-Yves Turpin, Denise Paulin, Bernard Alpert, and Christian Zentz, “Structural and dynamic changes of the serum response element and the core domain of serum response factor induced by their association,” Biochemical and Biophysical Research Communications, vol. 391, no. 1, pp. 203–208, 2010. View at Publisher · View at Google Scholar
  • Žofie Sovová, Vladimír Kopecký Jr., Tomáš Pazderka, Kateřina Hofbauerová, Daniel Rozbeský, Ondřej Vaněk, Karel Bezouška, and Rüdiger Ettrich, “Structural analysis of natural killer cell receptor protein 1 (NKR-P1) extracellular domains suggests a conserved long loop region involved in ligand specificity,” Journal of Molecular Modeling, vol. 17, no. 6, pp. 1353–1370, 2011. View at Publisher · View at Google Scholar
  • Rebecca Strawn, Thomas Stockner, Milan Melichercik, Lihua Jin, Wei-Feng Xue, Jannette Carey, and Rüdiger Ettrich, “Synergy of Molecular Dynamics and Isothermal Titration Calorimetry in Studies of Allostery,” Biothermodynamics, Part D, vol. 492, pp. 151–188, 2011. View at Publisher · View at Google Scholar
  • Vladimir Kopecky Jr., Ivana Kuta Smatanova, Jose L. Revuelta, Juan B. Arellano, Jannette Carey, Rüdiger Ettrich, Jaroslava Kohoutova, Mikalai Lapkouski, Katerina Hofbauerova, Zofie Sovova, Olga Ettrichova, Sergio González-Pérez, Alexander Dulebo, and David Kaftan, “Raman Spectroscopy Adds Complementary Detail to the High-Resolution X-Ray Crystal Structure of Photosynthetic PsbP from Spinacia oleracea,” PLoS ONE, vol. 7, no. 10, 2012. View at Publisher · View at Google Scholar
  • Daniel Nemecek, Josef Stepanek, and George J. ThomasCurrent Protocols in Protein Science, 2013. View at Publisher · View at Google Scholar
  • Barbora Profantova, Vaclav Profant, Vlastimil Zima, Vladimír Kopecký, Lucie Bednarova, Christian Zentz, Vladimir Baumruk, Pierre-Yves Turpin, and Josef Stepanek, “Protonation Effect of Tyrosine in a Segment of the SRF Transcription Factor: A Combined Optical Spectroscopy, Molecular Dynamics and DFT Calculation Study,” The Journal of Physical Chemistry B, pp. 131121063022000, 2013. View at Publisher · View at Google Scholar
  • Vladimír Kopecký, Rüdiger Ettrich, Tomáš Pazderka, Kateřina Hofbauerová, David Řeha, and Vladimír Baumruk, “ Influence of ligand binding on structure and thermostability of human α 1 -acid glycoprotein ,” Journal of Molecular Recognition, 2015. View at Publisher · View at Google Scholar
  • Monika Kallubai, Aparna Rachamallu, Daniel Pushparaju Yeggoni, and Rajagopal Subramanyam, “Comparative binding mechanism of lupeol compounds with plasma proteins and its pharmacological importance,” Mol. BioSyst., vol. 11, no. 4, pp. 1172–1183, 2015. View at Publisher · View at Google Scholar