Table of Contents Author Guidelines Submit a Manuscript
Spectroscopy
Volume 24, Issue 1-2, Pages 89-97
http://dx.doi.org/10.3233/SPE-2010-0411

FT-IR spectroscopy supported by PCA–LDA analysis for the study of embryonic stem cell differentiation

Diletta Ami,1 Antonino Natalello,1 Paolo Mereghetti,2 Tui Neri,3 Mario Zanoni,3 Manuela Monti,4 Silvia Maria Doglia,1,5 and Carlo Alberto Redi3,4

1Dipartimento di Biotecnologie e Bioscienze, Università di Milano-Bicocca, Milano, Italy
2BIOMS (Center for Modeling and Simulation in the Biosciences), University of Heidelberg, Heidelberg, Germany and Molecular and Cellular Modelling Group, EML Research GmbH, Heidelberg, Germany
3Laboratorio di Biologia dello Sviluppo, Dipartimento di Biologia Animale, Università degli Studi di Pavia, Pavia, Italy
4Fondazione IRCCS Policlinico San Matteo, Pavia, Italy
5Department of Biotechnology and Biosciences, University of Milano-Bicocca, Piazza della Scienza 2, 20126 Milano, Italy

Copyright © 2010 Hindawi Publishing Corporation. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Citations to this Article [14 citations]

The following is the list of published articles that have cited the current article.

  • Tom G. Bloemberg, Hans J. C. T. Wessels, Maurice van Dael, Jolein Gloerich, Lambert P. van den Heuvel, Lutgarde M. C. Buydens, and Ron Wehrens, “Pinpointing Biomarkers in Proteomic LC/MS Data by Moving-Window Discriminant Analysis,” Analytical Chemistry, vol. 83, no. 13, pp. 5197–5206, 2011. View at Publisher · View at Google Scholar
  • Diletta Ami, Paolo Mereghetti, Antonino Natalello, Silvia Maria Doglia, Mario Zanoni, Carlo Alberto Redi, and Manuela Monti, “FTIR spectral signatures of mouse antral oocytes: Molecular markers of oocyte maturation and developmental competence,” Biochimica Et Biophysica Acta-Molecular Cell Research, vol. 1813, no. 6, pp. 1220–1229, 2011. View at Publisher · View at Google Scholar
  • Sanguk Lee, Hangseok Choi, Kyungjoon Cha, Mi-Kyeong Kim, Jeong-Soo Kim, Chi Hee Youn, Su-Heon Lee, and Hoeil Chung, “Random Forest as a Non-parametric Algorithm for Near-infrared (NIR) Spectroscopic Discrimination for Geographical Origin of Agricultural Samples,” Bulletin of the Korean Chemical Society, vol. 33, no. 12, pp. 4267–4270, 2012. View at Publisher · View at Google Scholar
  • Diletta Ami, Antonino Natalello, and Silvia Maria Doglia, “Fourier transform infrared microspectroscopy of complex biological systems: From intact cells to whole organisms,” Methods in Molecular Biology, vol. 895, pp. 85–100, 2012. View at Publisher · View at Google Scholar
  • Sanguk Lee, Hyeseon Lee, and Hoeil Chung, “New discrimination method combining hit quality index based spectral matching and voting,” Analytica Chimica Acta, vol. 758, pp. 58–65, 2013. View at Publisher · View at Google Scholar
  • Sandro Imhasly, Hanspeter Naegeli, Sven Baumann, Martin von Bergen, Andreas Luch, Harald Jungnickel, Sarah Potratz, and Christian Gerspach, “Metabolomic biomarkers correlating with hepatic lipidosis in dairy cows,” BMC Veterinary Research, vol. 10, no. 1, pp. 122, 2014. View at Publisher · View at Google Scholar
  • Hyeseon Lee, Hoeil Chung, Sanguk Lee, and Jinyoung Hwang, “Exploring supervised neighborhood preserving embedding (SNPE) as a nonlinear feature extraction method for vibrational spectroscopic discrimination of agricultural samples according to geographical origins,” Talanta, 2015. View at Publisher · View at Google Scholar
  • Kyeol Chang, Sanguk Lee, Jimin Park, and Hoeil Chung, “Feasibility for non-destructive discrimination of natural and beryllium-diffused sapphires using Raman spectroscopy,” Talanta, 2015. View at Publisher · View at Google Scholar
  • Sergio López-Ureña, Miriam Beneito-Cambra, Rosa M. Donat-Beneito, and Guillermo Ramis-Ramos, “Overlapped moving windows followed by principal component analysis to extract information from chromatograms and application to classification analysis,” Anal. Methods, vol. 7, no. 7, pp. 3080–3088, 2015. View at Publisher · View at Google Scholar
  • Sarah Potratz, Harald Jungnickel, Stefan Grabiger, Patrick Tarnow, Wolfgang Otto, Ellen Fritsche, Martin von Bergen, and Andreas Luch, “Differential cellular metabolite alterations in HaCaT cells caused by exposure to the aryl hydrocarbon receptor-binding polycyclic aromatic hydrocarbons chrysene, benzo[a]pyrene and dibenzo[a,l]pyrene,” Toxicology Reports, 2016. View at Publisher · View at Google Scholar
  • Jaber Zafari, Fatemeh Javani jouni, Ali Ahmadvand, Parviz Abdolmaleki, Malihe Soodi, and Rezvan Zendehde, “Investigation of gene expressions in differentiated cell derived bone marrow stem cells during bone morphogenetic protein-4 treatments with Fourier transform infrared spectroscopy,” Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 2016. View at Publisher · View at Google Scholar
  • Soraya Bravo, María José Parra, Aileen Turner, Ariana Bertín, Germán Osorio, Carola Bruna, Rodrigo Hasbún, Rosario Castillo, Francisco Sepúlveda, and Joanna Tereszczuk, “Reversible in vivo cellular changes occur during desiccation and recovery: Desiccation tolerance of the resurrection filmy fern Hymenophyllum dentatum cav,” Gayana - Botanica, vol. 73, no. 2, pp. 402–413, 2016. View at Publisher · View at Google Scholar
  • Agnieszka Kamińska, Aneta Kowalska, Paweł Albrycht, Evelin Witkowska, and Jacek Waluk, “ABO blood groups' antigen–antibody interactions studied using SERS spectroscopy: towards blood typing,” Anal. Methods, vol. 8, no. 7, pp. 1463–1472, 2016. View at Publisher · View at Google Scholar
  • M. Huleihel, E. Shufan, L. Tsror, U. Sharaha, I. Lapidot, S. Mordechai, and A. Salman, “Differentiation of mixed soil-borne fungi in the genus level using infrared spectroscopy and multivariate analysis,” Journal of Photochemistry and Photobiology B: Biology, 2018. View at Publisher · View at Google Scholar