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Journal of Tropical Medicine
Volume 2016, Article ID 2707121, 8 pages
http://dx.doi.org/10.1155/2016/2707121
Research Article

Molecular Epidemiology and Genetic Diversity of Norovirus in Young Children in Phnom Penh, Cambodia

1Department of Enteric Diseases, Armed Forces Research Institute of Medical Sciences, 315/6 Rajvithi Road, Bangkok 10400, Thailand
2National Pediatric Hospital, 100 Russian Federation Boulevard, Phnom Penh, Cambodia

Received 17 August 2016; Accepted 17 November 2016

Academic Editor: Jean-Paul J. Gonzalez

Copyright © 2016 Kaewkanya Nakjarung et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Linked References

  1. M. M. Patel, M.-A. Widdowson, R. I. Glass, K. Akazawa, J. Vinjé, and U. D. Parashar, “Systematic literature review of role of noroviruses in sporadic gastroenteritis,” Emerging Infectious Diseases, vol. 14, no. 8, pp. 1224–1231, 2008. View at Publisher · View at Google Scholar · View at Scopus
  2. P. J. Glass, L. J. White, J. M. Ball, I. Leparc-Goffart, M. E. Hardy, and M. K. Estes, “Norwalk virus open reading frame 3 encodes a minor structural protein,” Journal of Virology, vol. 74, no. 14, pp. 6581–6591, 2000. View at Publisher · View at Google Scholar · View at Scopus
  3. J. Vinjé, “Advances in laboratory methods for detection and typing of norovirus,” Journal of Clinical Microbiology, vol. 53, no. 2, pp. 373–381, 2015. View at Google Scholar · View at Scopus
  4. A. Kroneman, H. Vennema, K. Deforche et al., “An automated genotyping tool for enteroviruses and noroviruses,” Journal of Clinical Virology, vol. 51, no. 2, pp. 121–125, 2011. View at Publisher · View at Google Scholar · View at Scopus
  5. J. J. Siebenga, H. Vennema, D.-P. Zheng et al., “Norovirus illness is a global problem: emergence and spread of norovirus gii.4 variants, 2001–2007,” Journal of Infectious Diseases, vol. 200, no. 5, pp. 802–812, 2009. View at Publisher · View at Google Scholar · View at Scopus
  6. M. Okada, T. Tanaka, M. Oseto, N. Takeda, and K. Shinozaki, “Genetic analysis of noroviruses associated with fatalities in healthcare facilities,” Archives of Virology, vol. 151, no. 8, pp. 1635–1641, 2006. View at Publisher · View at Google Scholar · View at Scopus
  7. L. C. Lindesmith, E. F. Donaldson, A. D. LoBue et al., “Mechanisms of GII.4 norovirus persistence in human populations,” PLoS Medicine, vol. 5, no. 2, pp. 0269–0290, 2008. View at Publisher · View at Google Scholar · View at Scopus
  8. M. Saito, S. Goel-Apaza, S. Espetia et al., “Multiple norovirus infections in a birth cohort in a peruvian periurban community,” Clinical Infectious Diseases, vol. 58, no. 4, pp. 483–491, 2014. View at Publisher · View at Google Scholar · View at Scopus
  9. R. A. Bull, M. M. Tanaka, and P. A. White, “Norovirus recombination,” Journal of General Virology, vol. 88, no. 12, pp. 3347–3359, 2007. View at Publisher · View at Google Scholar · View at Scopus
  10. S. Fukuda, Y. Sasaki, S. Takao, and M. Seno, “Recombinant norovirus implicated in gastroenteritis outbreaks in Hiroshima Prefecture, Japan,” Journal of Medical Virology, vol. 80, no. 5, pp. 921–928, 2008. View at Publisher · View at Google Scholar · View at Scopus
  11. I. G. A. Ruether, T. G. Dimitriou, D. Tsakogiannis et al., “Characterization of novel intergenogroup and intergenotype recombinant noroviruses from central Greece,” Molecular and Cellular Probes, vol. 28, no. 4, pp. 204–210, 2014. View at Publisher · View at Google Scholar · View at Scopus
  12. C. Y. Meng, B. L. Smith, L. Bodhidatta et al., “Etiology of diarrhea in young children and patterns of antibiotic resistance in Cambodia,” Pediatric Infectious Disease Journal, vol. 30, no. 4, pp. 331–335, 2011. View at Publisher · View at Google Scholar · View at Scopus
  13. P. V. Tra My, C. Thompson, H. L. Phuc et al., “Endemic norovirus infections in children, Ho Chi Minh City, Vietnam, 2009-2010,” Emerging Infectious Diseases, vol. 19, no. 6, pp. 977–980, 2013. View at Publisher · View at Google Scholar · View at Scopus
  14. L. Bodhidatta, E. Abente, P. Neesanant et al., “Molecular epidemiology and genotype distribution of noroviruses in children in Thailand from 2004 to 2010: a multi-site study,” Journal of Medical Virology, vol. 87, no. 4, pp. 664–674, 2015. View at Publisher · View at Google Scholar · View at Scopus
  15. P. Neesanant, T. Sirinarumitr, S. Chantakru et al., “Optimization of one-step real-time reverse transcription-polymerase chain reaction assays for norovirus detection and molecular epidemiology of noroviruses in Thailand,” Journal of Virological Methods, vol. 194, no. 1-2, pp. 317–325, 2013. View at Publisher · View at Google Scholar · View at Scopus
  16. S. Kojima, T. Kageyama, S. Fukushi et al., “Genogroup-specific PCR primers for detection of Norwalk-like viruses,” Journal of Virological Methods, vol. 100, no. 1-2, pp. 107–114, 2002. View at Publisher · View at Google Scholar · View at Scopus
  17. T. Kageyama, M. Shinohara, K. Uchida et al., “Coexistence of multiple genotypes, including newly identified genotypes, in outbreaks of gastroenteritis due to Norovirus in Japan,” Journal of Clinical Microbiology, vol. 42, no. 7, pp. 2988–2995, 2004. View at Publisher · View at Google Scholar · View at Scopus
  18. J. D. Thompson, D. G. Higgins, and T. J. Gibson, “CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice,” Nucleic Acids Research, vol. 22, no. 22, pp. 4673–4680, 1994. View at Publisher · View at Google Scholar · View at Scopus
  19. K. Tamura, G. Stecher, D. Peterson, A. Filipski, and S. Kumar, “MEGA6: molecular evolutionary genetics analysis version 6.0,” Molecular Biology and Evolution, vol. 30, no. 12, pp. 2725–2729, 2013. View at Publisher · View at Google Scholar · View at Scopus
  20. K. S. Lole, R. C. Bollinger, R. S. Paranjape et al., “Full-length human immunodeficiency virus type 1 genomes from subtype C- infected seroconverters in India, with evidence of intersubtype recombination,” Journal of Virology, vol. 73, no. 1, pp. 152–160, 1999. View at Google Scholar · View at Scopus
  21. K. Katayama, H. Shirato-Horikoshi, S. Kojima et al., “Phylogenetic analysis of the complete genome of 18 norwalk-like viruses,” Virology, vol. 299, no. 2, pp. 225–239, 2002. View at Publisher · View at Google Scholar · View at Scopus
  22. P. Huynen, A. Mauroy, C. Martin et al., “Molecular epidemiology of norovirus infections in symptomatic and asymptomatic children from Bobo Dioulasso, Burkina Faso,” Journal of Clinical Virology, vol. 58, no. 3, pp. 515–521, 2013. View at Publisher · View at Google Scholar · View at Scopus
  23. M. Jin, H.-P. Xie, Z.-J. Duan et al., “Emergence of the GII4/2006b variant and recombinant noroviruses in China,” Journal of Medical Virology, vol. 80, no. 11, pp. 1997–2004, 2008. View at Publisher · View at Google Scholar · View at Scopus
  24. T. M. Fumian, G. C. Aragão, J. D. P. Mascarenhas et al., “Detection of a novel recombinant strain of norovirus in an African-descendant community from the Amazon region of Brazil in 2008,” Archives of Virology, vol. 157, no. 12, pp. 2389–2392, 2012. View at Publisher · View at Google Scholar · View at Scopus
  25. Y.-J. Won, J.-W. Park, S.-H. Han et al., “Full-genomic analysis of a human norovirus recombinant GII.12/13 novel strain isolated from south korea,” PLoS ONE, vol. 8, no. 12, Article ID e85063, 2013. View at Publisher · View at Google Scholar · View at Scopus
  26. J. Mans, T. Y. Murray, and M. B. Taylor, “Novel norovirus recombinants detected in South Africa,” Virology Journal, vol. 11, article 168, 2014. View at Publisher · View at Google Scholar · View at Scopus
  27. R. A. Bull, G. S. Hansman, L. E. Clancy, M. M. Tanaka, W. D. Rawlinson, and P. A. White, “Norovirus recombination in ORF1/ORF2 overlap,” Emerging Infectious Diseases, vol. 11, no. 7, pp. 1079–1085, 2005. View at Publisher · View at Google Scholar · View at Scopus
  28. J. Buesa, B. Collado, P. López-Andújar et al., “Molecular epidemiology of caliciviruses causing outbreaks and sporadic cases of acute gastroenteritis in Spain,” Journal of Clinical Microbiology, vol. 40, no. 8, pp. 2854–2859, 2002. View at Publisher · View at Google Scholar · View at Scopus
  29. B. Nyambat, C. Y. Meng, K. Vansith et al., “Hospital-based surveillance for rotavirus diarrhoea in Phnom Penh, Cambodia, March 2005 through February 2007,” Vaccine, vol. 27, no. 5, pp. F81–F84, 2009. View at Publisher · View at Google Scholar · View at Scopus
  30. R. Malasao, N. Maneekarn, P. Khamrin et al., “Genetic diversity of norovirus, sapovirus, and astrovirus isolated from children hospitalized with acute gastroenteritis in Chiang Mai, Thailand,” Journal of Medical Virology, vol. 80, no. 10, pp. 1749–1755, 2008. View at Publisher · View at Google Scholar · View at Scopus
  31. S. Oum, D. Chandramohan, and S. Cairncross, “Community-based surveillance: a pilot study from rural Cambodia,” Tropical Medicine and International Health, vol. 10, no. 7, pp. 689–697, 2005. View at Publisher · View at Google Scholar · View at Scopus
  32. S. M. Ahmed, A. J. Hall, A. E. Robinson et al., “Global prevalence of norovirus in cases of gastroenteritis: a systematic review and meta-analysis,” The Lancet Infectious Diseases, vol. 14, no. 8, pp. 725–730, 2014. View at Publisher · View at Google Scholar · View at Scopus
  33. L. Sai, J. Sun, L. Shao, S. Chen, H. Liu, and L. Ma, “Epidemiology and clinical features of rotavirus and norovirus infection among children in Ji'nan, China,” Virology Journal, vol. 10, article 302, 2013. View at Publisher · View at Google Scholar · View at Scopus
  34. B. A. Lopman, T. Trivedi, Y. Vicuña et al., “Norovirus infection and disease in an ecuadorian birth cohort: association of certain norovirus genotypes with host FUT2 secretor status,” Journal of Infectious Diseases, vol. 211, no. 11, pp. 1813–1821, 2015. View at Publisher · View at Google Scholar · View at Scopus
  35. K. Shioda, A. Kambhampati, A. J. Hall, and B. A. Lopman, “Global age distribution of pediatric norovirus cases,” Vaccine, vol. 33, no. 33, pp. 4065–4068, 2015. View at Publisher · View at Google Scholar · View at Scopus
  36. A. L. Morrow, G. M. Ruiz-Palacios, X. Jiang, and D. S. Newburg, “Human-milk glycans that inhibit pathogen binding protect breast-feeding infants against infectious diarrhea,” The Journal of Nutrition, vol. 135, no. 5, pp. 1304–1307, 2005. View at Google Scholar · View at Scopus
  37. T. N. Hoa Tran, E. Trainor, T. Nakagomi, N. A. Cunliffe, and O. Nakagomi, “Molecular epidemiology of noroviruses associated with acute sporadic gastroenteritis in children: global distribution of genogroups, genotypes and GII.4 variants,” Journal of Clinical Virology, vol. 56, no. 3, pp. 185–193, 2013. View at Publisher · View at Google Scholar · View at Scopus
  38. R. A. Bull, E. T. V. Tu, C. J. McIver, W. D. Rawlinson, and P. A. White, “Emergence of a new norovirus genotype II.4 variant associated with global outbreaks of gastroenteritis,” Journal of Clinical Microbiology, vol. 44, no. 2, pp. 327–333, 2006. View at Publisher · View at Google Scholar · View at Scopus
  39. P. A. White, “Evolution of norovirus,” Clinical Microbiology and Infection, vol. 20, no. 8, pp. 741–745, 2014. View at Publisher · View at Google Scholar · View at Scopus
  40. Á. Fajardo, F. L. Tort, M. Victoria et al., “Phylogenetic analyses of Norovirus strains detected in Uruguay reveal the circulation of the novel GII.P7/GII.6 recombinant variant,” Infection, Genetics and Evolution, vol. 28, pp. 328–332, 2014. View at Publisher · View at Google Scholar · View at Scopus
  41. P. Chhabra, R. K. Dhongade, V. R. Kalrao, A. R. Bavdekar, and S. D. Chitambar, “Epidemiological, clinical, and molecular features of norovirus infections in western India,” Journal of Medical Virology, vol. 81, no. 5, pp. 922–932, 2009. View at Publisher · View at Google Scholar · View at Scopus
  42. R. A. Bull and P. A. White, “Mechanisms of GII.4 norovirus evolution,” Trends in Microbiology, vol. 19, no. 5, pp. 233–240, 2011. View at Publisher · View at Google Scholar · View at Scopus