Research Article
New Genetic Variants of Leptospira spp Characterized by MLST from Peruvian Isolates
Table 3
Genetic diversity parameters of isolates of pathogenic leptospires from the Iquitos (Peruvian Amazon), collected from 2002 to 2013.
| Genetic diversity parameters | Species of pathogenic leptospires | All species | L. interrogans | L. santarosai | L. noguchii | L. borpetersenii | L. kirschneri |
| Numbers of sequences | 21 | 16 | 6 | 1 | 1 | 46 | Numbers of haplotypes | 2 | 11 | 5 | 1 | 0 | 20 | Genetic diversity (SD) | 0.429 ± 0.089 | 0.908 ± 0.063 | 0.933 ± 0.122 | 0 | 0 | 0.867 ± 0.041 | Number of polymorphic sites (%) | 16 (0.51%) | 137 (4.4%) | 133 (4.27%) | 0 | 0 | 900(28.92%) | Nucleotide diversity | 0.00220 | 0.01082 | 0.01834 | 0 | 0 | 0.10736 |
|
|