Mediators of Inflammation

Research Article

Expression Profiling of Long Noncoding RNA Splice Variants in Human Microvascular Endothelial Cells: Lipopolysaccharide Effects In Vitro

Table 3

Comparison of lncRNAs differentially expressed during LPS treatment in HUVECs [22] and HMECs.


Differentially expressed lncRNAs in HUVECs (24 h)	Differentially expressed splice variants in HMECs (NONCODE IDs)	Fold change in HMECs (3 h)	Fold change in HMECs (24 h)

AL132709.5	NONHSAT039831	1.18	0.746
	NONHSAT039832	1.37	0.908
	NONHSAT039834	1.24	0.651
	NONHSAT039835	1.36	0.500
	NONHSAT039853	1.20	0.957
	NONHSAT039854	1.21	0.706
	NONHSAT039862	1.95	0.680
	NONHSAT039869	1.54	0.821
	NONHSAT140176	1.15	4.095

CLDN10-AS1	NONHSAT034761	ID	IU
	NONHSAT034762	IU	IU

AC068282.3	NONHSAT074154	Not detectable	Not detectable
	NONHSAT074148	1.26	1.026
	NONHSAT074149	1.78	0.339
	NONHSAT074150	0.96	1.140
	NONHSAT074151	0.72	2.047
	NONHSAT074152	0.58	1.143
	NONHSAT074153	1.81	4.777

RP11-534G20.3	NONHSAT012520	0.94	0.751
	NONHSAT012518	IU	0.350
	NONHSAT012519	3.12	1.370
	NONHSAT012522	ID	0.854
	NONHSAT012523	1.56	0.844
	NONHSAT012524	0.72	0.456
	NONHSAT012525	0.36	ID
	NONHSAT012527	IU	IU
	NONHSAT012528	0.96	IU
	NONHSAT012534	0.37	−5.861
	NONHSAT012521	2.75	1.090

XLOC_009994	NONHSAT026026	1.44	IU
	NONHSAT026024	1.24	0.826
	NONHSAT026027	IU	IU
	NONHSAT140047	Not detectable	Not detectable

AC016683.6	NONHSAT073764	1.44	0.341
	NONHSAT073753	3.60	ID
	NONHSAT073758	Not detectable	Not detectable
	NONHSAT073759	ID	IU
	NONHSAT073761	0.36	1.345
	NONHSAT073762	2.86	0.743
	NONHSAT073763	1.08	1.168
	NONHSAT073767	Not detectable	Not detectable
	NONHSAT073766	1.29	IU
	NONHSAT073765	1.93	1.019
	NONHSAT073768	4.13	3.194
	NONHSAT073769	1.66	1.348
	NONHSAT073770	0.72	0.682
	NONHSAT073771	Not detectable	Not detectable
	NONHSAT073772	0.72	0.749
	NONHSAT073773	0.24	IU

RP11-466I1.1	NONHSAT018559	Not detectable	Not detectable

RP11-184E9.2	NONHSAT100773	Not detectable	Not detectable

CTC-459I6.1	NONHSAT102422	Not detectable	Not detectable
	NONHSAT102423	Not detectable	Not detectable
	NONHSAT102425	Not detectable	Not detectable
	NONHSAT102426	Not detectable	Not detectable
	NONHSAT102427	Not detectable	Not detectable
	NONHSAT102428	Not detectable	Not detectable
	NONHSAT102424	Not detectable	Not detectable

RP11-138B4.1	NONHSAT099689	Not detectable	Not detectable
	NONHSAT099690	Not detectable	Not detectable

RP11-676J12.6	NONHSAT144771	Not detectable	Not detectable

XLOC_007697	NONHSAT131377	0.29	1.136

BX284650.1	NONHSAT005737	IU	ID
	NONHSAT005738	ID	IU
	NONHSAT005750	1.44	IU
	NONHSAT005751	0.07	IU
	NONHSAT005752	IU	IU
	NONHSAT005753	Not detectable	Not detectable
	NONHSAT005754	Not detectable	Not detectable
	NONHSAT005755	Not detectable	Not detectable

RP5-907D15.2	NONHSAT080552	ID	IU
	NONHSAT080546	0.68	0.488
	NONHSAT080547	0.36	IU
	NONHSAT080548	Not detectable	Not detectable
	NONHSAT080549	Not detectable	Not detectable
	NONHSAT080551	Not detectable	Not detectable
	NONHSAT080550	0.72	0.682
	NONHSAT080553	Not detectable	Not detectable
	NONHSAT080555	Not detectable	Not detectable

XLOC_006311	NONHSAT124447	0.72	0.339

Note: up- or downregulation by ≥3-fold is indicated in bold. ID: infinite downregulation (no detectable reads after LPS treatment/presence of detectable reads in the controls). IU: infinite upregulation (presence of detectable reads following LPS treatment/no detectable reads in the controls).