| | Antibody | Antigene | Dilution/fixation | Identified cell type | Reference, company |
| | Anti-NeuN | Neuronal nuclear antigen (DNA-binding) | 1 : 2000 4% PFA,
(2 h) | Surviving neurons | Anti-NeuN monoclonal antibody, mouse, catalog number MAB377, Merck Millipore | | Anti-Iba1 | Ionized calcium binding adaptor molecule 1 | 1 : 1000, 4% PFA,
(2 h) | Activated microglia/macrophages | Anti-iba1 polyclonal antibody, rabbit, catalog number 019-19741, Wako Chemicals | | Anti-iNOS | Inducible NO-synthetase | 1 : 100, 4% PFA,
(15 min) | M1-polarized microglia | Anti-iNOS polyclonal antibody, rabbit, catalog number ab15323, abcam | | Anti-Arg1 | Arginase 1 | 1 : 1000 4% PFA,
(15 min) | M2-polarized microglia | Anti-liver-arginase polyclonal antibody, goat, catalog number ab60176, abcam | | Anti-CD206 | Mannose receptor | 1 : 1500, 4% PFA,
(30 min) | M2-polarized microglia | Anti-CD206 polyclonal antibody, goat, catalog number AF2535, R&D Systems | | Anti-Ym1 | Chitinase-3-like-3 | 1 : 100, 50% acetone
(15 min, 4°C) 0.3% TX | M2-polarized microglia | Anti-Ym1 polyclonal, rabbit, catalog number 01404, Stemcell Technologies | | Anti-vWF | von Willebrand factor | 1 : 1500, 4% PFA,
(15 min) | Endothelial cells | Anti-vWF polyclonal antibody, rabbit, catalog number ab6994, abcam | | Anti-NG2 | Chondroitin sulfate proteoglycan | 1 : 4000, 100% acetone
(10 min, −20°C) | Polydendrocytes | Anti-NG2 polyclonal antibody, rabbit, catalog number AB5320, Millipore | | Anti-GFAP | Glial fibrillary acidic protein | 1 : 2000, 4% PFA
(overnight, 4°C) | Astrocytes | Anti-GFAP monoclonal antibody, mouse, catalog number MAB360, Millipore |
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