Mathematical Problems in Engineering / 2013 / Article / Tab 3

Research Article

A Novel Framework Based on ACO and PSO for RNA Secondary Structure Prediction

Table 3

A comparison of the highest matching base pair structures from SARNA-predict, RnaPredict, ACRNA, PAF, PSOfold, and mfold in terms of sensitivity and specificity.

SequenceLengthSARNA-PredictRnaPredictACRNAPAFPSOfoldmfold
SeSpSeSpSeSpSeSpSeSpSeSp

D. virilis 78442.142.227.926.927.926.944.241.742.941.535.232.5
X. laevis 94546.248.937.138.845.846.946.249.445.648.545.046.1
H. marismortui 12271.190.071.190.076.378.473.790.371.187.176.385.3
A. lagunensis 46874.364.660.251.963.754.175.268.676.164.765.555.6
M. anisopliae var.39463.365.062.562.063.365.075.882.775.074.476.779.3
H. rubra 54364.556.757.249.158.047.959.458.158.053.060.149.7
A. griffini 55674.058.861.850.373.355.277.963.876.359.272.554.6
H. sapiens 95444.748.833.535.644.748.846.647.744.447.235.736.8
A. fulgens 96435.138.930.933.934.338.737.439.835.139.627.930.7
S. acidocaldarius 149452.451.952.451.958.358.06058.158.358.057.954.6

Averages722.456.7756.5849.4649.0454.5651.9959.6460.0258.2857.3255.2852.52

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