A Novel Framework Based on ACO and PSO for RNA Secondary Structure Prediction

Table 4

Average sensitivity and specificity via ACRNA, IPSO, PAF, and PSOfold.

Sequence	Length	ACRNA		IPSO		PAF		PSOfold
		se	sp	se	sp	se	sp	se	sp
D. virilis	784	25.1	24.5	27.8	27.1	34.1	30.4	32.6	29.9
X. laevis	945	40.2	38.8	38.7	36.7	43.8	41.5	42.4	40.1
H. marismortui	122	70.5	73.6	67.8	68.1	70.6	76.0	69.2	75.4
A. lagunensis	468	61.3	52.6	60.5	51.8	62.4	53.8	63.9	52.6
M. anisopliae var.	394	60.9	63.5	57.1	56.2	66.5	64.1	65.1	63.3
H. rubra	543	56.2	48.8	50.1	41.3	56.9	47.8	54.4	47.8
A. griffini	556	67.1	54.1	63.2	47.3	69.2	52.9	68.5	54.5
H. sapiens	954	34.1	32.1	31.9	33.5	35.8	34.9	32.4	33.3
A. fulgens	964	31.1	30.2	30.2	32.5	34.2	31.8	32.6	31.8
S. acidocaldarius	1494	56.0	55.4	52.5	51.4	54.5	56.3	56.5	55.9
Averages	722.4	50.25	47.36	47.98	44.59	52.8	48.95	51.76	48.46