Brain Network Architecture and Plasticity: MR Neuroimaging Perspectives
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Qiongling Li, Xinwei Li, Xuetong Wang, Yuxia Li, Kuncheng Li, Yang Yu, Changhao Yin, Shuyu Li, Ying Han, "Topological Properties of LargeScale Cortical Networks Based on Multiple Morphological Features in Amnestic Mild Cognitive Impairment", Neural Plasticity, vol. 2016, Article ID 3462309, 14 pages, 2016. https://doi.org/10.1155/2016/3462309
Topological Properties of LargeScale Cortical Networks Based on Multiple Morphological Features in Amnestic Mild Cognitive Impairment
Abstract
Previous studies have demonstrated that amnestic mild cognitive impairment (aMCI) has disrupted properties of largescale cortical networks based on cortical thickness and gray matter volume. However, it is largely unknown whether the topological properties of cortical networks based on geometric measures (i.e., sulcal depth, curvature, and metric distortion) change in aMCI patients compared with normal controls because these geometric features of cerebral cortex may be related to its intrinsic connectivity. Here, we compare properties in cortical networks constructed by six different morphological features in 36 aMCI participants and 36 normal controls. Six cortical features (3 volumetric and 3 geometric features) were extracted for each participant, and brain abnormities in aMCI were identified by cortical network based on graph theory method. All the cortical networks showed smallworld properties. Regions showing significant differences mainly located in the medial temporal lobe and supramarginal and right inferior parietal lobe. In addition, we also found that the cortical networks constructed by cortical thickness and sulcal depth showed significant differences between the two groups. Our results indicated that geometric measure (i.e., sulcal depth) can be used to construct network to discriminate individuals with aMCI from controls besides volumetric measures.
1. Introduction
Mild cognitive impairment (MCI) is considered to be a transitional period between normal aging and Alzheimer’s disease (AD), which is a progressive, neurodegenerative disease characterized by cognitive decline greater than expected for one’s age and educational level yet not fulfilling the criteria of AD [1]. Amnestic MCI (aMCI), as the most common subtype of MCI, is characterized by primary memory impairments with single or multiple cognitive domains impaired and likely progresses to AD [2–4]. Current studies of aMCI have shown disrupted functional integration [5] and abnormal structural connections between regions [6]. Morphological features have been widely used to characterize brain structures [7, 8] and also served as structural measures to investigate topological properties in largescale cortical networks [9–11]. Previous studies on largescale cortical network in MCI mostly used cortical thickness and gray matter volume as descriptors to construct structural network of the human cortex [12, 13].
However, different morphological features reveal different intrinsic properties of cerebral cortex. For example, volumetric measures (i.e., cortical thickness, gray matter volume) reflect the size, density, and arrangement of cells (neurons, neuroglia, and nerve fibers) [14, 15], and surface area is linked to the number of mini columns in the cortical layer [16]. Using largescale cortical network analysis based on cortical thickness, several studies have found disrupted smallworld properties (i.e., lower clustering coefficient and shorter path length) in MCI patients compared to normal controls [13, 17, 18]. A cortical network study using surface area can reveal topological properties of the networks resulting from the concurrent changes between different anatomical regions [10]. In addition, geometric measures (i.e., sulcal depth, curvature, and metric distortion) mainly reflect cortical folding pattern [19–21]. For instance, sulcal depth and curvature measure specific aspects of the cortical geometry, and metric distortion is a wider measure of the overall degree of cortical folding [22]. These geometric measures related to cortical folding may vary with the changes of intrinsic as well as extrinsic connectivity according to the tension theory of the cerebral cortex morphogenesis [19] and could be more suitable descriptors for finding the anatomicalaxonal and morphological connectivity correlation [10]. Thus, we assume that geometric measures can be used to construct cortical network that may detect the alterations from structural disconnection in aMCI and show different topological properties compared with volumetric measures (i.e., cortical thickness, gray matter volume, and surface area).
Here, we investigated topological properties of largescale human cortical network based on graph theory analysis method by employing multiple morphological features in aMCI patients. Then we compared the topological properties of different cortical networks constructed by different morphological features. We expected that topological properties of cortical networks based on geometric measures in aMCI patients may be different from normal controls and can be used to discriminate individuals with aMCI from controls.
2. Materials and Methods
2.1. Participants
Seventytwo righthanded participants, including thirtysix aMCI and demography matched healthy normal controls, participated in this study. The aMCI participants were recruited from a clinical research program at Xuanwu Hospital, Beijing, China. The healthy normal controls were recruited from the local community through advertisements. This study was approved by the Research Ethics Review Board of Xuanwu Hospital, and written informed consent was obtained from each participant.
All the aMCI participants were identified according to the criteria for amnestic MCI [23–26], which included (a) memory complaint, preferably confirmed by an informant; (b) objective memory impairment, adjusted for age and education; (c) normal or nearnormal performance on general cognitive functioning and no or minimum impairment of daily life activities; (d) the Clinical Dementia Rating (CDR) score of 0.5; and (e) not meeting the criteria for dementia according to the DSMIV (Diagnostic and Statistical Manual of Mental Disorders, 4th Edition, revised). Participants with aMCI were diagnosed by experienced neurologists. Participants were excluded if they met the following clinical characteristics: (a) a clear history of stroke; (b) severe depression that led to mild cognitive impairment (Hamilton Depression Rating Scale score >24 points); (c) other nervous system diseases, which can cause cognitive impairment (such as brain tumors, Parkinson’s disease, encephalitis, and epilepsy); (d) cognitive impairment caused by traumatic brain injury; (e) other systemic diseases, which can cause cognitive impairment, such as thyroid dysfunction, severe anemia, syphilis, and HIV; and (f) a history of psychosis or congenital mental growth retardation. Clinical and demographic data for the participants are shown in Table 1.
 
Age, education, MMSE, and MoCA data are expressed as mean ± SD (range). No significant differences were between two groups in gender, age, and education years. Groups for aMCI and NC showed significant differences in MMSE and MoCA scores . Statistical p value was analyzed using twosample test, in which gender was converted into a virtual variable. 
2.2. MRI Data Acquisition
MRI data acquisition was performed on a 3.0 T Siemens scanner by employing a sagittal magnetizationprepared rapid gradient echo (MPRAGE) sequence with the following imaging parameters: repetition time ms; echo time ms; inversion ms; flip angle = 90°; field of view mm × 250 mm; ; 176 slices, mm. Brain MR images were inspected by an experienced neuroradiologist, and no gross abnormalities were observed for any subject.
2.3. Cortical Reconstruction and Morphological Features Extraction
Both the cortical reconstruction and morphological features extraction were obtained by using the FreeSurfer software (http://surfer.nmr.mgh.harvard.edu/) with a standard cortical automatic handling protocol. First, the data were normalized to a standard anatomical template [27] and corrected for biasfield inhomogeneity. Then the images were skullstripped using a watershed algorithm [28] and subsequently segmented into subcortical white matter and deep gray matter volumetric structures [29, 30]. The initial tessellation was formed by reconstructing the gray matter/white matter boundary (white surface) and the outer cortical surface (pial surface) [31, 32]. Subsequently, a series of deformable procedures were performed, including surface inflation [31], registration to a spherical atlas [33], and parcellation of the cerebral cortex into units based on gyral and sulcal structures [30]. All reconstructed surfaces were visually inspected for grossanatomical topological defects. Finally, a variety of morphological features at each vertex on the pial surface were computed, including volumetric (cortical thickness, surface area, and GM volume) and geometric (sulcal depth, metric distortion, and mean curvature) measures, more details seen in this paper [34]. The thickness maps of both NC and aMCI groups are shown in Figure 1(a).
2.4. Cortical Network Construction
We employed a cortical scheme comprised of 148 regions from Destrieux Atlas. Cortical networks were built from partial correlation of interregional cortical morphological features. Prior to the correlation analysis, a linear regression was performed at every region to remove the effects of age, gender, and the total morphological feature value for each measure. And the resulting residuals were used to substitute for the raw morphological feature values. In this experimental design, the number of observations (participants, ) is smaller than the number of dependent variables (regions, ). “Small , large ” lead to inaccurate estimations of the covariance matrix [35]. A method based on the LedoitWolf lemma was used to shrink the covariance estimates [36]. Finally, the partial correlation coefficients were computed with R software (http://www.rproject.org/). The partial correlation matrixes (adjacent matrix) of cortical networks constructed by thickness are shown in Figure 1(b).
The adjacent matrix was then binarized to an undirected and unweighted graph as shown in Figure 1(c) (at the sparsity of 5%) using a wide range of sparsity values (from 5% to 35%, ). Sparsity of 5% meant that only the strongest 5% of the connections remained and 95% of the connectivity matrices were removed. If the sparsity was less than 5%, the smallworld properties were not estimable. And if the sparsity was greater than 35%, more noise would be included in the graph and it would be more like random network [37, 38]. The same sparsity range was applied for all network analyses.
2.5. Graph Theoretical Characterization
Graph theory is usually considered an attractive model for the mathematical treatment of cortical network connectivity [39]. In general, a complex network can be represented as a graph , which consists of a set of nodes and a set of edges. Several important parameters of the graph for the connectivity matrices were estimated in this study.
Degree is the number of links connected to the node. Degree of a node “” is defined aswhere is the set of all nodes in the network; is the connection status between nodes “” and “” and when link exists; otherwise .
The clustering coefficient of a node “” with degree is defined as the ratio of the existing connections () between the node’s neighbors and the maximum possible connections between neighbors of the node. The clustering coefficient of node “” is given asThe clustering coefficient is an index of local structure, while the clustering coefficient of the whole network is the average over all nodes
The shortest path length between two nodes “” and “” of the graph is the smallest number of edges that is required to connect “” and “.” The shortest path length of a node “” can be calculated as the distance between a node “” and all other nodes [37]:The characteristic path length is defined as the mean of path length over all pairs of nodes:
The smallworldness network parameter is defined as those with small path length, like random network, and high clustering coefficient networks, much higher than random network. Smallworld properties of a given network may be influenced by its intrinsic features, such as the number of nodes, edges, and the degree distribution. Thus, 1000 random networks were generated by using a random rewiring process [40], which preserves the number of nodes, mean degree, and degree distribution. This results in a normalized clustering coefficient and a normalized path length . Then a simple quantitative measurement of smallworldness is acquired [41]: The real cortical network is considered to be a smallworld network if it meets the following criteria [37]:
Betweenness centrality is a measure of network hubs that are crucial to efficient communication. BC is defined as the ratio of the number of shortest path passing through node “” to the total number of shortest paths between pairs of nodes “” and “”:where is the number of shortest paths between “” and “” and is the number of shortest path between “” and “” that passes through “.” For further comparison, the betweenness would be normalized as , where is the average betweenness of the network. Cortex regions were defined as hubs, whose betweenness values were more than twice the average betweenness of the network ().
2.6. Statistical Analysis
Twosample test was used to test the demographics, in which gender was converted into a virtual variable. To test the statistical significance of the betweengroup differences in the parameters of the cortical networks, a nonparametric permutation test was employed [42]. In this permutation test, we calculated possible values of the test statistic on a reference distribution after repeatedly rearranging the observed data from NC and aMCI groups. First, characteristics of the cortical network, such as , , and , were calculated for NC and aMCI groups, respectively. Then NC and aMCI data were mixed. From the mixed data, the same number of subjects as aMCI patients was randomly chosen to be considered as aMCIs and the rest to be NCs. Next, partial correlation matrix for each randomized group was recalculated and corresponding binarized matrix was obtained using the same sparsity as in the real cortical networks. Third, network parameters for each randomized group were computed. This process was repeated 1000 times and the 95 percentile points of each distribution used as the critical values for a onetailed procedure were repeated at every sparsity value of the cortical networks.
3. Results
3.1. Demographics
Twosample test was used to test the demographics, in which gender was converted into a virtual variable, and results are shown in Table 1. There were no significant differences in gender, age, or years of education between aMCI and NC. Groups for aMCI and NC showed significant differences in MMSE and MoCA scores .
3.2. SmallWorld Properties of Cortical Networks
Compared with random networks, smallworld networks had higher clustering coefficients and similar characteristic path length. Over a range of sparsity values (), clustering coefficient and characteristic path length were calculated for both the NC and aMCI networks based on different morphological features. The smallworld attributes of the networks are shown in Figure 2. Compared with matched random networks which had the same number of nodes and degree distribution, all morphological networks had similarly characteristic path length () and larger clustering coefficients () in both NC and aMCI networks. Compared with NC, aMCI showed slightly larger smallworld characteristics (larger ) in the cortical networks obtained for volumetric measures (cortical thickness and GM volume) and there were no great differences between NC and aMCI cortical networks based on surface area and geometric measures (mean curvature, metric distortion, and sulcal depth).
(a) Thickness
(b) Volume
(c) Area
(d) Curv
(e) Jacobian
(f) Sulc
3.3. Abnormal Changes in Nodal Betweenness Centrality
As crucial components required for efficient communication in a network, hubs regulated information flow and played a key role in network resilience against attacks. To study the nodal characteristics, the cortical networks were constructed at certain sparsity of 11%. This sparsity ensured that all regions were included in the cortical networks while minimizing the number of falsepositive paths. Based on the results, some regions were identified as hubs in the cortical network of both the NC and aMCI groups. Details of the hub regions in the cortical networks are shown in Table 2.

In this study, the identified hub in networks based on volumetric measures, as shown in Figures 3(a) and 3(b), was involved in the frontal, temporal, parietal, and insula association cortex in the NC and temporal lobe, superior parietal lobule, cingulate cortex, precentral sulcus, callosum, and insula in the aMCI. High betweenness in network based on geometric measures was similar to volumetric measures. It was worth noting that hubs in networks using sulcal depth as descriptor included frontal polar, lingual sulcus, medial occipitotemporal sulcus, precentral sulcus, temporal gyrus (Heschl), and corpus callosum in NC group. And in aMCI group, regions included collateral sulcus, precentral sulcus, postcentral sulcus, temporaloccipital incisures, frontal gyrus, and corpus callosum (Figure 3(c)).
(a) Thickness
(b) Volume
(c) Sulc
Permutation test was used to detect the significant differences in betweenness between NC and aMCI. Regions showing significant increase in the betweenness of cortical networks using volumetric measures in aMCI patients included collateral sulcus, occipital gyrus, temporal gyrus, temporal pole, parietooccipital sulcus, postcentral gyrus, and subcallosal gyrus. And decreased betweenness regions were located in subparietal sulcus, middle occipital gyrus, precuneus, and superior temporal sulcus as shown in Figures 4(a) and 4(b). Betweenness in inferior temporal gyrus, superior temporal gyrus, inferior frontal gyrus, and pericallosal sulcus showed significant increase in network constructed by sulcal depth in aMCI patients. And betweenness in lateral sulcus, medial occipitotemporal sulcus, lateral occipitotemporal sulcus, cingulate sulcus, and short insular gyri significantly decreased .
(a) Thickness
(b) Volume
(c) Sulc
3.4. Comparing Networks from Different Morphological Features between Groups
3.4.1. Volumetric Measures
As shown in Figures 5(a) and 5(b), clustering coefficient and characteristic path length were higher in the structural cortical networks obtained from volumetric measures (both cortical thickness and GM volume) of aMCI. A permutation test was used to detect the betweengroup differences. The arrows indicated the significant differences between NC and aMCI in the clustering coefficient of networks constructed by cortical thickness at the sparsity of 12% and 14% as shown in Figure 5(a). Significant differences in characteristic path length of networks constructed by cortical thickness had been detected between NC and aMCI at the sparsity of 11%, 12%, and 14%. In the cortical networks obtained from GM volume, as shown in Figure 5(b), no significant differences were found in clustering coefficient between NC and aMCI . Only at the sparsity of 35% was a significant difference found in characteristic path length . Our findings provided further evidence for which networks constructed by cortical thickness had a smallworld characteristic loss in aMCI.
(a) Thickness
(b) Volume
(c) Area
(d) Curv
(e) Jacobian
(f) Sulc
In Figure 5(c), the clustering coefficient and characteristic path length were much larger for aMCI in cortical network using surface area as descriptor. However, no significant differences were found in all permutation tests for smallworld properties of cortical network based on surface area.
3.4.2. Geometric Measures
Smallworld properties of cortical network using sulcal depth were very similar to properties in network using thickness for both NC and aMCI. As shown in Figure 5(f), the clustering coefficient was higher for aMCI, and the characteristic path length had no much difference between aMCI and NC. Statistical analysis further revealed significant differences in the clustering coefficient at , , 16%, and 18%, and and 25%. Significant differences were found in the characteristic path length between NC and aMCI at the range of sparsity values ( and ).
In Figure 5(e), smallworld properties analysis using metric distortion as a descriptor showed similar results to properties in network based on cortical thickness. As shown in Figure 5(e), the clustering coefficient was larger for the aMCI compared with NC subjects. What is more, the characteristic path length had no much difference between NC and aMCI. However, statistical analysis revealed no significant differences in all the topological parameters over the whole range of sparsity values. Similar to metric distortion, no significant differences were found when using mean curvature as descriptor in cortical network .
4. Discussion
In this study, we explored the properties of largescale human brain cortical networks using multiple morphological features (including 3 volumetric measures, cortical thickness, surface area, and gray matter volume, and 3 geometric measures, sulcal depth, metric distortion, and mean curvature) based on graph theory analysis in cognitively normal older adults and amnestic mild cognitive impairment (aMCI) patients. We found that all networks constructed by these morphological features showed smallworld properties which implied high efficiency of information transformation in human cognition. Properties in networks constructed by cortical thickness and sulcal depth showed significant differences between NC and aMCI patients. Besides, regions showing significant differences mainly located in the medial temporal lobe and supramarginal and right inferior parietal lobe. Our results indicated that geometric measure (i.e., sulcal depth) can be used to construct network to discriminate individuals with aMCI from controls besides volumetric measures and provided new insights into the study of the pathophysiological mechanism of amnestic MCI.
Previous studies have demonstrated that the cortical thickness and GM volume can be used as morphological descriptors to study the complex cortical networks, and networks based on the cortical thickness and GM volume followed the smallworld properties [10–12, 43, 44]. Similar to previous studies, networks based on volumetric measures showed altered smallworld properties (i.e., increased clustering coefficient and path length) in aMCI patients compared with NC subjects. Short path length and high clustering coefficient in cortical network mean effective and rapid transfers of information between and across remote regions that are believed to constitute the basis of cognitive processes. Large means an optimal balance between local specialization and global integration. The cortical thickness changes are related to myelination of gray matter or the underlying white matter, as we know damage of myelin sheath is often associated with decreased functional efficiency. Here, we found longer path length and higher clustering coefficient in aMCI that may indicate a disturbance of the normal balance [45].
Consistent with the volumetric measures, all networks based on geometric measures also followed the smallworld properties but less optimal smallworldness in aMCI network, while properties in network constructed by sulcal depth showed much more significant differences between NC and aMCI patients compared with properties in networks based on other geometric measures through a range of sparsity values. Previous studies have demonstrated that geometric differences are predominantly linked with the development of neuronal connections and cortical pattern of connectivity [19, 46] and are thus a marker for cerebral development or abnormal cortical connectivity due to disorders. Here networks constructed by sulcal depth in aMCI with less optimal smallworldness implied abnormal structural connections between specific regions in aMCI patients.
Previous studies indicated that hubs were mainly in regions of the parietal, temporal, and frontal heteromodal association cortex (SPL, SMG, MTG, STG, IFG, and SFG) and highly connected primary motor cortex (PrCG) [45]. Hubs in this study were predominately in frontal, temporal, parietal, and insula association cortex in NC of networks based on volumetric measures. Many previous studies ignore the insula when constructing cortical network because the insula is covered by other lobes. Compared with NC, there were more hubs in aMCI involved intemporal lobe, superior parietal lobule, cingulate cortex, precentral sulcus, callosum, and insula. In networks based on sulcal depth, hub regions in NC were compatible with previous studies of functional and structural cortical network [47]. These hub regions, which are considered to be the substrates of human cognition and consciousness, are in the association cortex that receives convergent inputs from multiple other cortical regions [12]. And in networks based on sulcal depth, hub regions in aMCI had more hubs compared with NC, which was similar to regions in networks based on volumetric measures.
Evidences from previous studies have shown the shrunk brain regions in aMCI patients located in parahippocampal gyrus, medial temporal lobe, entorhinal cortex, cingulum, insula, and thalamus [48, 49]. Our results were partially consistent with previous studies. Abnormal changes in the temporal, occipital gyrus and cingulated sulcus in aMCI group have been reported as being related to memory performance. What is more, significantly higher nodal centrality in aMCI was considered as increased functional connectivity occurred in various brain regions [50]. This may serve as a compensatory mechanism that enables patients with aMCI to use other additional resources to maintain normal cognitive performance [51, 52]. The abnormal characteristics of the cortical networks observed in aMCI may reflect anatomical structural abnormalities. Our findings may contribute to an understanding of the cerebral organization in aMCI.
Some limitations should be addressed in the future. Firstly, several studies have demonstrated that network resolution has an effect on topological properties of human neocortex by using volumetric measures as descriptors of anatomical connectivity [10, 53, 54]. In our network analysis, we only used 148 nodes to construct the network. In the future, it is interesting to investigate the relationship between network resolution and topological properties of human neocortex by using geometric measures. Secondly, topological properties of a given network may be influenced by intrinsic features of that network, such as the number of nodes, number of connections, and degree distribution. To counteract these effects, we used random networks with the same number of nodes and edges as surrogates to normalize the corresponding graph measures. Without any correction, the smallworld index cannot be used to compare the smallworldness of different empirical networks. However, random surrogates may increase the sensitivity to differences in nodes number and degrees for the commonly used smallworld index [55]. The minimum spanning tree (MST) [56], a mathematically defined and unbiased subnetwork, provides similar information about network topology as conventional graph measures. It is noted that the MST discards all loop connections that the clustering coefficient and path length in the smallworld index are highly correlated. Several network characteristics such as modularity, hierarchy, and rich club cannot be interpreted with the MST. There is still no optimal method to normalize network measures. Thirdly, different thresholding may lead to different network topological organizations [47]. Notably, connectivity values often vary depending on subjects and conditions, which can result in differences in average degree when using the same threshold for all networks. In the future, it is important to study the optimal thresholding methods in constructing networks.
5. Conclusions
This work demonstrated that besides cortical thickness and gray matter volume, sulcal depth can also be used to study the topological properties of cortical networks. We found that networks based on both the volumetric measures and geometric measures showed smallworld properties and properties in these networks were different from aMCI to NC. Notably, properties in cortical network constructed by sulcal depth showed significant differences between the two groups. Our results indicate that geometric measure (sulcal depth) can be used to construct network to discriminate individuals with aMCI from controls.
Conflict of Interests
The authors declare that there is no conflict of interests regarding the publication of this paper.
Acknowledgments
This work was supported by the National Natural Science Foundation of China (Grants nos. 31371007, 81430037, 81171403, 81301188, and 81471731), Beijing Municipal Science & Technology Commission (Grant no. Z131100006813022), Kallikrein Medical Research Program (Grant no. 201206006), and the National Key Department of Neurology funded by Chinese Health and Family Planning Committee.
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Copyright © 2016 Qiongling Li et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.