RNA Expression Profile and Alternative Splicing Signatures of Genistein-Treated Breeder Hens Revealed by Hepatic Transcriptomic Analysis

Table 5

Characteristics of the reads from 12 chick liver libraries.

Sample ID	Raw reads	30 (%)	Mean quality score (PF)	Clean reads	Mapped reads 1	Mapped reads 2	Mapping ratio^a (%)
CON1	82746656	91.41	35.64	77448096	35948401	35845761	92.70
CON2	92500088	91.42	35.64	86840638	40288053	40218776	92.70%
CON3	93885866	91.34	35.61	87984510	40866183	40787367	92.80%
CON4	84365924	91.44	35.63	79053630	36517429	36434054	92.30%
LEN1	94821854	91.42	35.64	88770278	41256072	41184918	92.90%
LEN2	93846098	91.44	35.64	87990384	40847022	40760507	92.70%
LEN3	82423386	90.54	35.42	76597766	35397144	35297989	92.30%
LEN4	78768686	91.39	35.61	73737576	34108625	34045496	92.40%
HGE1	82198796	91.69	35.68	77223440	35680932	35600982	92.30%
HGE2	81162754	91.77	35.71	76358678	35445783	35371543	92.70%
HGE3	84695016	91.54	35.65	79366240	36085294	36033498	90.90%
HGE4	81651432	91.21	35.59	76812548	35624517	35614277	92.70%

ID: identification; 30: Phred quality score. ^aMapping ratio, mapped reads/all reads.