| Marker | Sorting method | Effect | Reference |
| CD49f | FACS | ↑ Clonogenity, ↑ proliferation, ↑ migration, ↑ multilineage differentiation, | [26] |
| CD49f | FACS | ↑ Colony forming, ↑ adipogenic and osteogenic differentiation | [25] |
| CD49f | FASC | ↑ Self-renewal, ↑ spheres formation, ↑ adipogenic and osteogenic differentiation | [27] |
| CD49f | MASC | ↑ Adhesion, ↑ proliferation, ↑ adipogenic and osteogenic differentiation, ↑ migration, ↑ antiapoptotic potential | [28] |
| CD271 | FACS | ↑ Clonogenicity, ↑ osteogenic differentiation | [30] |
| CD271 | FACS | ↑ Proliferation, | [31] |
| CD271 | FACS | ↑ Proliferation, ↓ osteogenic and adipose differentiation | [47] |
| CD271 | MACS | ↑ Neuronal and glial differentiation, ↑ migration toward islets and islet-like cell clusters | [32] |
| CD271 | MACS | ↑ Pluripotent genes expression | [48] |
| CD271 | MACS | No changes in multipotent differentiation in vitro, ↑ osteochondral repair in vivo, ↓ angiogenesis in vitro and in vivo | [49] |
| CD271 | MACS | ↑ Adipogenesis, chondrogenesis, osteogenesis | [33] |
| CD349 | FACS | ↓ Angiogenic-properties, ↓ vasculogenesis, ↓ re-endothelialization, similar osteogenic differentiation potential | [35] |
| CD349 | FASC | ↑ Clonogenicity, ↑ multi-lineage differentiation | [36] |
| GD2 | FACS | ↑ Clonogenicity, ↑ proliferation, ↑ adipogenesis, ↑ osteogenesis, ↑ gene expression: LPL, adipsin, collagen I, CBFA1, OC, ↑ content of positive cells: Sca-1+, CD105+, SSEA-1+, Nanog+, ↓ content of positive cells: CD34+, C-kit+, CD45+, CD11b+ | [40] |
| GD2 | MACS | ↑ Clonogenicity, ↑ colony size, ↑ proliferation, ↑ gene expression: SSEA-4, Oct-4, Sox-2, Nanog, Nestin, GFAP, NSE, ↑ adipogenesis, ↑ osteogenesis | [37] |
| Sca-1 | FACS | ↑ Clonogenicity, ↑ gene expression: NANOG, TERT, BMP2, Myf5, ↓ chondrogenesis, ↓ gene expression: Col2a1 | [41] |
| Sca-1 | FACS | ↑ Clonogenicity | [50] |
| Sca-1 | FCAS | ↑ Gene expression: Eng (CD105), ↓ gene expression: IL-6, Pdgfra, Ly6a, Itgb1, Itga5, CD44, Thy1(CD90) | [51] |
| SSEA-3 | FACS | ↑ Differentiation into insulin-producing cells, ↑ pluripotent genes expression | [43] |
| SSEA-3 | FACS | ↑ Migration toward injured liver cells, ↑ restoration of liver function in liver fibrosis model, ↑ in vivo spontaneous differentiation into hepatocyte | [52] |
| SSEA-3 | FACS | ↑ Sphere formation | [22] |
| SSEA-3 | FACS | ↑ Sphere formation, ↑ pluripotency, ↑ spontaneous expression and expression after differentiation of markers from three germ layers | [21] |
| SSEA-3 | FACS | Better biodistribution, ↑ motor and cognitive functions of HIE rats | [45] |
| SSEA-3 | FACS, MACS | Similar effects observed in both sorting methods ↑ sphere formation, ↑ pluripotency, ↑ neural differentiation | [42] |
| SSEA-3 | MACS | ↓ Apoptosis and senescence after UV or H2O2 treatment, ↑ activation of damage repair system of DNA via non-homologous end joining | [53] |
| SSEA-3 | MACS | ↑ Pluripotent genes expression | [48] |
| SSEA-3 | MACS | ↑ Expression and secretion of growth factors, ↑ pluripotency gene expression, ↑ increased wound healing of skin ulcers | [44] |
| SSEA-4 | FACS | No differences in proliferation, pluripotency genes expression, osteogenic differentiation, adipogenic differentiation | [34] |
| SSEA-4 | FACS | ↑ Clonogenicity, ↑ proliferation | [54] |
| SSEA-4 | FACS | ↑ Pluripotency and neural gene expression, ↑ viability of spheres, smaller spheres formed, no differences in proliferation and clonogenicity | In submission |
| SSEA-4 | MACS | ↑ Adipogenesis | [33] |
| SSEA-4 CD271 | FACS | ↑ Proliferation | [31] |
| SSEA-4 CD271 | FACS | ↑ Clonogenicity, ↓ adipogenesis | [55] |
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