Ecotype-Level Genetic Biodiversity of Five Italian Traditional Crops
Table 2
Genetic indices calculated for the SSR pattern.
Ecotype
Locus
N
Na
Ne
I
Ho
He
UHe
F
Gene diversity
PIC
“Bianco di Acerra”
Bnlg118
10
4
2.86
1.16
0.6
0.65
0.68
0.08
0.67
0.6
Bnlg391
10
3
2.25
0.94
0.3
0.56
0.58
0.46
0.56
0.49
Nc130
9
2
1.12
0.21
0.11
0.1
0.11
−0.06
0.1
0.1
Nc133
10
2
1.47
0.5
0.2
0.32
0.34
0.38
0.32
0.27
Phi014
10
4
2.15
1.03
0.5
0.54
0.56
0.07
0.54
0.5
Phi024
10
4
2.11
0.98
0.2
0.53
0.55
0.62
0.53
0.48
Phi029
5
4
3.33
1.28
0.8
0.7
0.78
−0.14
0.7
0.65
Mean value
9
3
2.18
0.87
0.39
0.49
0.51
0.2
0.49
0.44
“Spiga Napoletana Rossa”
Bnlg118
5
3
2.27
0.95
0.4
0.56
0.62
0.29
0.56
0.5
Bnlg391
10
2
2
0.69
0
0.5
0.53
1
0.5
0.38
Nc130
8
1
1
0
0
0
0
#N/D
0
0
Nc133
10
4
2.6
1.09
0.6
0.62
0.65
0.02
0.62
0.54
Phi014
10
1
1
0
0
0
0
#N/D
0
0
Phi024
8
4
2.72
1.14
1
0.63
0.68
−0.58
0.63
0.57
Phi029
7
2
1.69
0.6
0.57
0.41
0.44
−0.4
0.41
0.32
Mean value
8
2
1.9
0.64
0.37
0.39
0.42
#N/D
0.39
0.33
“Spiga Rossa”
Bnlg118
8
1
1
0
0
0
0
#N/D
0
0
Bnlg391
10
3
2.06
0.82
0.6
0.52
0.54
−0.17
0.52
0.42
Nc130
8
2
2
0.69
0
0.5
0.53
1
0.5
0.38
Nc133
10
3
2.99
1.1
0.7
0.67
0.7
−0.05
0.67
0.59
Phi014
8
2
1.28
0.38
0
0.22
0.23
1
0.22
0.19
Phi024
9
3
2.22
0.87
0.56
0.55
0.58
−0.01
0.55
0.45
Phi029
8
2
1.44
0.48
0.38
0.3
0.33
−0.23
0.3
0.26
Mean value
8
2
1.86
0.62
0.32
0.39
0.42
#N/D
0.39
0.33
“Spiga Bianca”
Bnlg118
9
4
2.57
1.12
0.67
0.61
0.65
−0.09
0.61
0.56
Bnlg391
10
4
2.74
1.14
0.4
0.64
0.67
0.37
0.64
0.57
Nc130
7
3
2.33
0.96
0.57
0.57
0.62
0
0.57
0.5
Nc133
10
3
2.9
1.08
0.6
0.66
0.69
0.08
0.66
0.58
Phi014
8
3
2.67
1.04
0.63
0.63
0.67
0
0.63
0.55
Phi024
10
3
1.8
0.75
0.6
0.45
0.47
−0.35
0.45
0.38
Phi029
10
2
1.1
0.2
0.1
0.1
0.1
−0.05
0.1
0.09
Mean value
9
3
2.3
0.9
0.51
0.52
0.55
−0.01
0.52
0.46
“Spiga Napoletana Bianca”
Bnlg118
9
4
3.06
1.21
0.89
0.67
0.71
−0.32
0.67
0.61
Bnlg391
9
4
2.79
1.16
0.89
0.64
0.68
−0.38
0.64
0.58
Nc130
9
2
1.53
0.53
0.44
0.35
0.37
−0.29
0.35
0.29
Nc133
9
2
1.25
0.35
0.22
0.2
0.21
−0.13
0.2
0.18
Phi014
9
3
2.05
0.83
0.11
0.51
0.54
0.78
0.51
0.43
Phi024
9
3
2.16
0.9
0.56
0.54
0.57
−0.03
0.54
0.47
Phi029
8
3
2.84
1.07
0.5
0.65
0.69
0.23
0.67
0.61
Mean value
9
3
2.24
0.86
0.52
0.51
0.54
−0.02
0.51
0.45
“Spogna Bianca”
Bnlg118
5
4
2.94
1.22
0.8
0.66
0.73
−0.21
0.66
0.61
Bnlg391
8
4
3.12
1.25
0.88
0.68
0.73
−0.29
0.68
0.62
Nc130
8
2
1.13
0.23
0.13
0.12
0.13
−0.07
0.12
0.11
Nc133
8
2
1.97
0.69
0.63
0.49
0.53
−0.27
0.49
0.37
Phi014
7
2
1.15
0.26
0.14
0.13
0.14
−0.08
0.26
0.24
Phi024
7
2
1.15
0.26
0.14
0.13
0.14
−0.08
0.13
0.12
Phi029
8
3
2.72
1.04
0.88
0.63
0.68
−0.38
0.63
0.56
Mean value
7
3
2.03
0.71
0.51
0.41
0.44
−0.2
0.42
0.38
N = number of alleles; Ne = number of effective alleles; I = Shannon Index; Ho = observed heterozygosity; He = expected heterozygosity; UHe = unbiased expected heterozygosity; F = Fixation Index; PIC = polymorphic index content.
