Ecotype-Level Genetic Biodiversity of Five Italian Traditional Crops
Table 3
Genetic indices calculated for the SSR pattern.
Ecotype
Locus
N
Na
Ne
I
Ho
He
UHe
F
Gene diversity
PIC
Febbrarese
AMS03
8
6
3.76
1.54
0.75
0.73
0.78
−0.02
0.73
0.7
AMS08
9
1
1
0
0
0
0
NA
0
0
AMS13
7
2
1.32
0.41
0.29
0.24
0.26
−0.17
0.24
0.21
ACM132
7
7
5.44
1.81
0.57
0.82
0.88
0.3
0.82
0.79
ACAEM68
8
2
1.88
0.66
0.5
0.47
0.5
−0.07
0.47
0.36
ACAFC04
8
3
2.51
0.98
0.88
0.6
0.64
−0.45
0.6
0.52
ACACL08
8
4
3.46
1.31
0.88
0.71
0.76
−0.23
0.71
0.66
Mean value
8
4
2.77
0.96
0.55
0.51
0.55
NA
0.51
0.46
Marzatica
AMS03
4
5
3.2
1.39
0.75
0.69
0.79
−0.09
0.69
0.65
AMS08
6
1
1
0
0
0
0
NA
0
0
AMS13
6
2
1.8
0.64
0.67
0.44
0.48
−0.5
0.44
0.35
ACM132
6
4
3
1.24
0.33
0.67
0.73
0.5
0.67
0.62
ACAEM68
5
2
1.47
0.5
0
0.32
0.36
1
0.32
0.27
ACAFC04
5
2
2
0.69
1
0.5
0.56
−1
0.5
0.38
ACACL08
5
2
1.92
0.67
0.8
0.48
0.53
−0.67
0.48
0.36
Mean value
5
3
2.06
0.73
0.51
0.44
0.49
NA
0.44
0.38
Ramata di Montoro
AMS03
11
6
3.51
1.45
0.82
0.71
0.75
−0.14
0.75
0.71
AMS08
11
1
1
0
0
0
0
NA
0.1
0.09
AMS13
10
3
1.5
0.61
0.4
0.34
0.35
−0.19
0.44
0.41
ACM132
9
6
4.05
1.57
0.67
0.75
0.8
0.11
0.78
0.75
ACAEM68
11
7
2.95
1.46
0.45
0.66
0.69
0.31
0.75
0.72
ACAFC04
11
3
2.07
0.82
0.82
0.52
0.54
−0.58
0.57
0.49
ACACL08
10
5
3.39
1.35
0.6
0.71
0.74
0.15
0.72
0.67
Mean value
10
4
2.64
1.04
0.54
0.53
0.55
NA
0.59
0.55
Vatolla
AMS03
9
3
2.22
0.87
0.89
0.55
0.58
−0.62
0.55
0.45
AMS08
10
1
1
0
0
0
0
NA
0
0
AMS13
9
2
1.91
0.67
0.78
0.48
0.5
−0.64
0.44
0.35
ACM132
9
5
3.68
1.43
0.67
0.73
0.77
0.08
0.77
0.73
ACAEM68
9
5
3.24
1.34
0.56
0.69
0.73
0.2
0.66
0.61
ACAFC04
10
2
1.92
0.67
0.8
0.48
0.51
−0.67
0.48
0.36
ACACL08
10
3
2.74
1.05
0.5
0.64
0.67
0.21
0.65
0.58
Mean value
9
3
2.39
0.86
0.6
0.51
0.54
NA
0.51
0.44
N = Number of alleles; Ne = number of effective alleles; I = Shannon Index; Ho = observed heterozygosity; He = expected heterozygosity; UHe = unbiased expected heterozygosity; F = Fixation Index; PIC = polymorphic index content.
