Research Article
Parallel Seed-Based Approach to Multiple Protein Structure Similarities Detection
Table 2
Average run times, standard deviation, and speedups for varying number of cores.
| Number of cores | 1 | 2 | 4 | 6 | 8 | 10 | 12 | 14 | 16 | Run time (ms) | 49744 | 25873 | 14269 | 10315 | 8555 | 7425 | 6668 | 6189 | 5679 | Stand. deviation (ms) | 458 | 1969 | 1192 | 604 | 401 | 284 | 257 | 197 | 193 | Stand. deviation (%) | 0.9 | 7.6 | 8.4 | 5.9 | 4.7 | 3.8 | 3.9 | 3.2 | 3.4 | Speedup | 1 | 1.9 | 3.5 | 4.8 | 5.8 | 6.7 | 7.5 | 8.0 | 8.8 |
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