Tracing the Origin of Genotype II African Swine Fever Virus in China by Genomic Epidemiology Analysis

Table 1

List of genotype II ASFV genome sequences used in this study.

NCBI Acc nos.	Strains	Hosts	Lengths	Collection dates	Countries	Genotypes	Ref
LR536725.1	Belgium 2018/1	Wild boar	190,599	2018/9	Belgium	II	[28]
MK543947.1	Belgium/Etalle/wb/2018	Wild boar	190,202	2018/9/10	Belgium	II	[29]
	China/LN/2018/1	Pig	189,397	2018/8/3	China	II	This study
MK128995.1	China/2018/AnhuiXCGQ	Pig	189,393	2018/9/2	China	II	[27]
MK333180.1	Pig/HLJ/2018	Pig	189,404	2018/9/5	China	II	[30]
MK645909.1	ASFV-wbBS01	Wild boar	189,394	2018/11/1	China	II	NA
MK940252.1	CN/2019/InnerMongolia-AES01	Pig	189,403	2019/2/19	China	II	NA
MN172368.1	ASFV/pig/China/CAS19-01/2019	Pig	189,405	2019/1/2	China	II	[31]
MN393476.1	Wuhan 2019-1	Pig	190,576	2019/8/19	China	II	NA
MT496893.1	GZ201801	Pig	189,393	2018/12/22	China	II	NA
MW521382.1	HuB20	Pig	188,643	2020/10/1	China	II	NA
MW656282.1	Pig/Heilongjiang/HRB1/2020	Pig	189,355	2020/9/12	China	II	[32]
LR722600.1	CzechRepublic 2017/1	Wild boar	190,594	2017/6	Czech	II	[33]
LS478113.1	Estonia 2014	Wild boar	182,446	2014/9	Estonia	II	[34]
FR682468.2	Georgia 2007/1	Pig	190,584	2007/1/4	Georgia	II	[35]
LR899193.1	Germany 2020/1	Wild boar	190,592	2020/9/10	Germany	II	NA
MN715134.1	ASFV_HU_2018	Wild boar	190,601	2018/4/24	Hungary	II	[36]
MK628478.1	ASFV/LT14/1490	Wild boar	189,399	2014/1	Lithuania	II	[37]
MW856068.1	MAL/19/Karonga	Pig	183,325	2019	Malawi	II	[38]
LR722599.1	Moldova 2017/1	Pig	190,598	2017	Moldova	II	[20]
MG939583.1	Pol16_20186_o7	Pig	189,401	2016	Poland	II	[39]
MG939584.1	Pol16_20538_o9	Pig	189,399	2016	Poland	II	[39]
MG939585.1	Pol16_20540_o10	Pig	189,405	2016	Poland	II	[39]
MG939586.1	Pol16_29413_o23	Pig	189,393	2016	Poland	II	[39]
MG939587.1	Pol17_03029_C201	Wild boar	189,405	2017	Poland	II	[39]
MG939588.1	Pol17_04461_C210	Wild boar	189,401	2017	Poland	II	[39]
MG939589.1	Pol17_05838_C220	Wild boar	189,393	2017	Poland	II	[39]
MH681419.1	ASFV/POL/2015/Podlaskie	Wild boar	189,394	2015/2	Poland	II	[40]
MT847620.1	Pol17_55892_C754	Pig	189,414	2017	Poland	II	[14]
MT847621.1	Pol18_28298_O111	Pig	189,409	2018	Poland	II	[14]
MT847622.1	Pol17_31177_O81	Pig	189,422	2017	Poland	II	[14]
MT847623.2	Pol19_53050_C1959/19	Pig	189,413	2019	Poland	II	[14]
KJ747406.1	Kashino 04/13	Wild boar	189,387	2013/3/1	Russia	II	NA
KP843857.1	Odintsovo_02/14	Wild boar	189,333	2014/2	Russia	II	NA
MT459800.1	ASFV/Kabardino-Balkaria 19/WB-964	Wild boar	189,252	2019/3/26	Russia	II	NA
MW306190.1	ASFV/Amur 19/WB-6905	Wild boar	189,248	2019/8/29	Russia	II	[41]
MW306191.1	ASFV/Primorsky 19/WB-6723	Wild boar	189,256	2019/8/28	Russia	II	[41]
MW306192.1	ASFV/Ulyanovsk 19/WB-5699	Wild boar	189,263	2019/8/21	Russia	II	[41]
MT748042.1	ASFV/Korea/pig/PaJu1/2019	Pig	190,597	2019/9/16	South Korea	II	NA
LR813622.1	Tanzania/Rukwa/2017/1	Pig	183,186	2017	Tanzania	II	[42]
MW396979.1	ASFV/Timor-leste/2019/1	Pig	192,237	2019/9/27	Timor-Leste	II	[43]
MN194591.1	ASFV/Kyiv/2016/131	Pig	191,911	2016/4/11	Ukraine	II	[44]