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The Scientific World Journal
Volume 2012 (2012), Article ID 450124, 4 pages
http://dx.doi.org/10.1100/2012/450124
Research Article

Sequence Comparison Alignment-Free Approach Based on Suffix Tree and L-Words Frequency

1Faculdade de Ciências da Universidade do Porto, 4169 Porto, Portugal
2Instituto de Patologia e Imunologia Molecular da Universidade do Porto, 4200 Porto, Portugal
3Centro de Matemática da Universidade do Porto, 4169 Porto, Portugal

Received 15 June 2012; Accepted 5 August 2012

Academic Editors: J.-C. Aude, Y. Muto, and T. Roegnvaldsson

Copyright © 2012 Inês Soares et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Citations to this Article [5 citations]

The following is the list of published articles that have cited the current article.

  • Luis Santana-Quintero, Hayley Dingerdissen, Jean Thierry-Mieg, Raja Mazumder, and Vahan Simonyan, “HIVE-Hexagon: High-Performance, Parallelized Sequence Alignment for Next-Generation Sequencing Data Analysis,” Plos One, vol. 9, no. 6, 2014. View at Publisher · View at Google Scholar
  • Luca Pinello, Giosue Lo Bosco, and Guo-Cheng Yuan, “Applications of alignment-free methods in epigenomics,” Briefings in Bioinformatics, vol. 15, no. 3, pp. 419–430, 2014. View at Publisher · View at Google Scholar
  • Oliver Bonham-Carter, Joe Steele, and Dhundy Bastola, “Alignment-free genetic sequence comparisons: a review of recent approaches by word analysis,” Briefings in Bioinformatics, vol. 15, no. 6, pp. 890–905, 2014. View at Publisher · View at Google Scholar
  • Hai ming Ni, Da wei Qi, and Hongbo Mu, “Applying MSSIM combined chaos game representation to genome sequences analysis,” Genomics, 2017. View at Publisher · View at Google Scholar
  • Kang Xu, Mengmeng Guo, and Jinhua Du, “ Molecular Characteristics and Rheological Properties of Water-extractable Polysaccharides Derived from Okra ( Abelmoschus esculentus L.) ,” International Journal of Food Properties, 2017. View at Publisher · View at Google Scholar