Gene Expression Network Reconstruction by LEP Method Using Microarray Data

Table 1

The sensitivity, PPV, and 𝐹₁ values in four scenarios of the simulation studies.

	PPV	Sensitivity	𝐹1	SSE	Time (s)
		Scenario 1: 𝑃=10
LEP	0.934	0.708	0.805	1075.313	0.121
LASSO	0.602	0.908	0.724	1053.937	2.184
SCAD	0.891	0.727	0.801	1070.202	0.594
		Scenario 2: 𝑃=10
LEP	0.926	0.826	0.873	1185.403	0.259
LASSO	0.833	0.916	0.873	1215.098	2.507
SCAD	0.932	0.828	0.877	1191.352	0.933
		Scenario 3: 𝑃=20
LEP	0.778	0.707	0.741	2112.376	2.431
LASSO	0.467	0.868	0.607	2100.014	16.976
SCAD	0.693	0.741	0.716	2089.248	6.247
		Scenario 4: 𝑃=20
LEP	0.831	0.834	0.832	2351.997	2.763
LASSO	0.667	0.910	0.770	2380.255	23.792
SCAD	0.735	0.852	0.789	2298.897	7.193