Robust Microarray Meta-Analysis Identifies Differentially Expressed Genes for Clinical Prediction

Table 2

Differentially expressed genes identified from rank average meta-analysis of multiple microarray datasets.

Breast cancer			Renal cancer			Pancreatic cancer
Gene; symbol	Weighted; average rank	Top 20 in # of datasets	Gene; symbol	Weighted; average rank	Top 20 in # of datasets	Gene; symbol	Weighted average rank	Top 20 in # of datasets
ESR1	0.20	6	LOX	13.65	4	S100P	31.42	2
NAT1	33.99	3	COL5A2	16.86	3	LAMC2	51.44	2
DNALI1	48.46	1	ADFP	19.08	4	PHLDA2	201.93	1
SCUBE2	69.27	1	SCNN1A	19.25	2	S100A2	233.07	0
TFF1	76.74	1	LOXL2	21.37	3	MSLN	234.39	1
MYB	82.17	0	ELTD1	27.17	4	WFDC2	236.00	1
CYP2B7P1	86.93	1	PPARGC1A	30.73	1	ITGB6	238.13	0
PDZK1	98.81	0	IFITM1	31.19	2	HK2	239.87	2
PADI2	114.44	0	RALGPS1	37.17	2	R88990*	244.34	0
DNAJC12	123.83	0	VWF	37.85	2	ANO1	252.57	1
TSPAN1	126.87	0	CD70	41.65	0	MXRA5	261.28	0
CDH3	127.46	1	ARHGDIB	42.60	1	PLEK2	264.09	0
XBP1	134.70	0	P4HA1	48.91	2	CDC2	279.79	2
KRT18	136.35	0	BST2	50.56	2	VCAN	285.59	0
EEF1A2	138.25	0	F2R	52.22	1	FERMT1	286.92	1
SLC16A6	140.73	1	SPARC	52.86	1	MCOLN3	309.32	0
ACADSB	142.55	1	LDB2	56.29	2	TNFRSF21	315.68	1
SRD5A1	159.99	1	GJA1	58.54	0	KYNU	324.78	0
CHAD	164.19	0	PLAG1	60.29	1	TACC3	333.27	0
P4HTM	165.08	1	DSG2	68.03	1	TMC5	336.72	0

*Gene symbol not available, using accession number instead.