Phylogenetic, Expression, and Bioinformatic Analysis of the ABC1 Gene Family in Populus trichocarpa
Table 1
ABC1 gene family in P. trichocarpa.
Gene namea
Accession numberb
NCBI Locus IDc
Lengthd
Localizatione
PtrABC1P1
POPTR_0004s03280
XM_002305610.1
630
chlo
PtrABC1P2
POPTR_0011s04110
XM_002316632.1
628
chlo
PtrABC1P3
POPTR_0004s07340
XM_002305222.1
518
chlo
PtrABC1P4
POPTR_0002s06180
XM_002300851.1
734
nucl
PtrABC1P5
POPTR_0002s00200
XM_002301843.1
704
chlo
PtrABC1P6
POPTR_0010s22780
XM_002316324.1
826
chlo
PtrABC1P7
POPTR_0001s14410
XM_002297781.1
807
mito
PtrABC1P8
POPTR_0006s29050
XM_002330776.1
737
chlo
PtrABC1P9
POPTR_0019s08950
XM_002329202.1
543
mito
PtrABC1P10
POPTR_0018s03080
XM_002324321.1
712
mito
PtrABC1P11
POPTR_0012s09520
XM_002318076.1
471
cyto
PtrABC1P12
POPTR_0008s06780
XM_002311182.1
538
mito
PtrABC1P13
POPTR_0007s06450
XM_002310562.1
616
chlo
PtrABC1P14
POPTR_0005s08490
XM_002307087.1
1235
chlo
PtrABC1P15
POPTR_0014s16660
XM_002320491.1
719
cyto
PtrABC1P16
POPTR_0002s18630
XM_002515113.1
616
chlo
PtrABC1P17
POPTR_0018s04280
XM_002324089.1
242
nucl
Systematic designation given to P. trichocarpa ABC1Ps.
bPhytozome locus ID of full-length cDNA sequence available at Phytozome (http://www.phytozome.net/search.php).
cAccession number of NCBI locus ID(http://www.ncbi.nlm).
dLength of predicted gene product (amino acids).
eLocalization of ABC1 proteins as predicted by WoLF PSORT (http://wolfpsort.org/).