The Scientific World Journal / 2013 / Article / Tab 1

Research Article

Evaluation of Allele Frequency Estimation Using Pooled Sequencing Data Simulation

Table 1

Allele balance for 3 independent datasets.

DatasetSampleMin.1st Qu.MedianMean3rd Qu.Max.Mean 95% conf. lo.Mean 95% conf. hi.

1055QC00030.0910.4230.480.480.5360.8620.4760.483
1055QC00040.10.4270.4770.480.530.8260.4770.483
1055QC00050.0460.4290.4810.4820.5360.9390.4790.486
1055QC00060.10.4180.4780.4810.5420.9090.4770.485
1055QC00070.1560.4170.4760.4750.5360.8790.4720.479
1055QC00080.1480.4210.4810.4820.5420.9050.4790.486
1055QC00090.1480.4220.4780.480.5360.9630.4760.483
1055QC00110.10.4210.4810.480.5380.9520.4770.484
1055QC00120.0950.4290.4780.480.53110.4770.483
1055QC00130.1650.4240.4820.4820.5410.90.4790.486
SureSelect1055QC00140.1030.4290.4810.4830.5380.8180.480.487
1055QC00160.130.4250.480.4820.540.9090.4780.485
1055QC00170.1360.4220.4810.480.5360.90.4770.483
1055QC00180.1820.4240.480.480.5370.9870.4770.483
1055QC00200.20.4320.4830.4850.5360.8150.4820.488
1055QC00210.120.4290.4810.4840.53810.480.487
1055QC00220.0910.4240.4780.4790.5330.9050.4760.482
1055QC00240.0770.4220.4780.4780.5350.8570.4740.481
1055QC00250.130.4290.4810.4840.540.8970.4810.488
1055QC00260.130.420.4780.4790.5390.7930.4760.482
1055QC00280.0390.4190.4770.4760.5310.9380.4720.479

100090.0440.4470.50.4990.5510.4960.501
102440.0910.4440.50.4970.550.9090.4950.499
TruSeq102900.0650.4440.50.4970.550.9170.4950.499
200070.0770.4470.50.4980.550.9230.4960.5
200170.0440.4470.50.4980.550.9210.4960.5
203010.0770.4490.50.4990.550.9670.4970.501

ERR0040430.040.3760.440.4470.5110.9860.440.453
ERR0040470.1250.3910.4470.4510.50310.4460.457
Array basedSRR0139080.0810.370.4750.4810.5840.9770.4720.489
SRR0139090.0710.3720.4760.4840.5910.950.4760.492
SRR0154280.0930.3890.4880.490.5860.9090.4830.498
SRR0154290.10.4260.4960.4970.5640.9130.4910.503

AllMean0.1030.4210.4820.4830.5430.9190.4790.487