An Empirical Study of Different Approaches for Protein Classification

Table 12

Comparison among ensembles and best stand-alone descriptors in terms of AUC.

AUC	Datasets
Methods	HU	PF	GP	GR	VR	DNA	ENZ	MEM	GO	SL	HI	AD	VI1	VI2	CY	SC
PSSM(PP)	81.2	93.1	99.8	80.8	81.8	95.5	78.0	96.8	84.5	95.7	94.8	87.7	86.2	87.2	79.4	70.3
PSSM(SAN)	76.4	87.7	99.7	93.0	72.0	95.2	71.1	95.5	78.6	94.1	95.7	82.7	87.3	85.7	81.8	73.4
PSSM(LPQ_G)	72.0	89.5	99.9	82.3	77.7	89.5	66.2	93.6	73.0	93.7	97.6	86.8	82.3	83.9	70.3	61.6