Research Article
An Empirical Study of Different Approaches for Protein Classification
Table 8
Comparison among ensembles and best stand-alone descriptors in terms of AUC in multiclass problems.
| | AUC | Datasets | | Protein representation | MEM | PF | ENZ | GR | VR | SL | CY | GO | SC |
| | PSSM(PP) | 96.8 | 93.1 | 78.0 | 80.8 | 81.8 | 95.7 | 79.4 | 84.5 | 70.3 | | PSSM(SAN) | 95.5 | 87.7 | 71.1 | 93.0 | 72.0 | 94.1 | 81.8 | 78.6 | 73.4 | | AAS(AC) | 93.6 | 84.8 | 66.7 | 92.7 | 81.8 | 93.2 | 78.4 | 70.0 | 67.6 | | FUS1 | 97.1 | 92.7 | 80.2 | 92.3 | 84.7 | 96.7 | 84.5 | 83.8 | 75.3 | | FUS2 | — | 95.9 | 80.1 | — | — | — | 84.3 | 82.8 | 76.4 |
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