freeQuant: A Mass Spectrometry Label-Free Quantification Software Tool for Complex Proteome Analysis

Table 1

The analysis of proteins in acyl-CoA dehydrogenase family.

Protein name	Total count of peptides	Total count of shared peptides	Rate (%)	Rank (NSAF only)	Rank (with shared peptides)
Acadvl	3033	3000	98.91	8	8
Acadl	1449	1419	97.93	11	12
Acadm	1150	1131	98.35	51	39
Acads	705	692	98.16	63	63
Acad8	200	188	94.00	140	100
Acads	180	180	100	157	1444
Acad9	155	144	92.90	182	111
Acadsb	113	105	92.92	228	165
Acad10	85	80	94.12	395	289