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The Scientific World Journal
/
2015
/
Article
/
Tab 5
/
Research Article
Mechanism of Gene Amplification via Yeast Autonomously Replicating Sequences
Table 5
Software/online tools used in the present study.
Database/software
Address
SGD
http://www.yeastgenome.org/
oriDB
http://www.oridb.org/index.php
WEBTHERMODYN
http://www.gsa.buffalo.edu/dna/dk/WEBTHERMODYN/
TREP
http://www.oridb.org/index.php
bend.it
http://www.icgeb.trieste.it/dna/
TwistFlex
http://bioinfo.md.huji.ac.il/marg/Flexstab/
model.it
http://www.icgeb.trieste.it/dna/
RasMol
http://biology.kenyon.edu/BMB/RASWIMAN.HTM
BL2SEQ
http://workbench.sdsc.edu/
(
http://seqtool.sdsc.edu/CGI/BW.cgi
)
CLUSTALW
http://www.ebi.ac.uk/Tools/msa/clustalw2/
banana
http://services.cbib.u-bordeaux2.fr/pise/banana.html
EMBOSS
http://www.ebi.ac.uk/Tools/emboss/
RNAfold
http://rna.tbi.univie.ac.at/cgi-bin/RNAfold.cgi
GeneiousPro
Software package
KaleidaGraph 3.0
http://www.synergy.com/kg.htm